Example quality control and genome wide association pipeline using a dbGaP YRI Height and Cholesterol cohort (https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000378.v1.p1) and a dbGaP Hispanic Community Health Study (https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000810.v1.p1).
Questions can be submitted at aandaleon@luc.edu.