Installing DCEMRI.jl failing
Closed this issue · 13 comments
Not sure, might be something on my end, though, looking for advice.
julia> Pkg.add("DCEMRI")
INFO: Initializing package repository /home/users/elijah/.julia/v0.4
INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl
fatal: unable to connect to github.com:
github.com[0: 192.30.252.128]: errno=Connection timed out
ERROR: failed process: Process(git clone -q -b metadata-v2 git://github.com/JuliaLang/METADATA.jl METADATA, ProcessExited(128)) [128]
in run at ./process.jl:531
in anonymous at pkg/dir.jl:52
in cd at ./file.jl:22
in init at pkg/dir.jl:50
in cd at pkg/dir.jl:28
in add at pkg.jl:23
It looks like you are unable to connect to github.com. Are you behind a firewall?
Can you try again? If it doesn't work, try running
traceroute github.com
and see where it hangs.
Very likely my institution's firewall is the problem, but I have been able to pip install from git in the past.
traceroute to github.com (192.30.252.131), 30 hops max, 60 byte packets
1 10.30.64.2 (10.30.64.2) 0.242 ms * *
2 10.0.30.1 (10.0.30.1) 0.337 ms 0.408 ms 0.476 ms
3 tmcfw-a-i.tmh.tmc.edu (10.0.0.1) 0.738 ms 0.726 ms 0.720 ms
4 206.83.48.15 (206.83.48.15) 0.889 ms 0.873 ms 0.880 ms
5 borderc2-gw-t3-1.chat.tmc.edu (192.31.88.237) 1.152 ms 0.986 ms 1.118 ms
6 borderx1-gw-t2-3.chat.tmc.edu (192.31.88.85) 1.363 ms 1.081 ms 1.409 ms
7 iah-edge-18.inet.qwest.net (63.145.96.57) 1.473 ms 1.647 ms 1.498 ms
8 * * *
9 * * *
10 ae-3-80.edge3.washington4.level3.net (4.69.149.146) 39.858 ms 39.874 ms 39.871 ms
11 ae-3-80.edge3.washington4.level3.net (4.69.149.146) 39.863 ms ae-2-70.edge3.washington4.level3.net (4.69.149.82) 39.974 ms 39.991 ms
12 * * *
13 * * *
14 * * *
15 * * *
16 * * *
17 * * *
18 * * *
19 * * *
20 * * *
21 * * *
22 * * *
23 * * *
24 * * *
25 * * *
26 * * *
27 * * *
28 * * *
29 * * *
30 * * *
What happens when you make a clean directory and run
git clone git@github.com:davidssmith/DCEMRI.jl.git?
elijah@picasso:~$ sudo git clone git@github.com:davidssmith/DCEMRI.jl.git
[sudo] password for elijah:
Cloning into 'DCEMRI.jl'...
The authenticity of host 'github.com (192.30.252.131)' can't be established.
RSA key fingerprint is 16:27:ac:a5:76:28:2d:36:63:1b:56:4d:eb:df:a6:48.
Are you sure you want to continue connecting (yes/no)? y
Please type 'yes' or 'no': yes
Warning: Permanently added 'github.com,192.30.252.131' (RSA) to the list of known hosts.
Permission denied (publickey).
fatal: The remote end hung up unexpectedly
The previous link required that you add your local ssh key to your Github account. You apparently have not done that. No worries. Try this command instead:
git clone https://github.com/davidssmith/DCEMRI.jl.git.
Looks like the installation was successful. I'll see if I can get it to work now, thanks.
That command was to test your access to Github. It shouldn't have installed the package properly. To install the package in the correct location, you'll need to use the command Pkg.add("DCEMRI").
Oops. Previous command downloaded 144MB, guess I assumed that was the DCEMRI.jl software.
julia> Pkg.add("DCEMRI") gives the same error as before, connection timed out.
It seems other people are having this problem (JuliaLang/julia#14762) because some firewalls may be blocking git. One workaround is to issue this command in the shell (not Julia):
git config --global url."https://".insteadOf git://
Also, this issue is related: JuliaLang/julia#12583
That seems to have done the trick. DCEMRI is now installed, thought I did get some errors toward the very end:
WARNING: Module BinDeps uuid did not match cache file
===============================[ ERROR: PyCall ]================================
LoadError: precompile(true) but require failed to create a precompiled cache file
while loading /home/users/elijah/.julia/v0.4/PyCall/deps/build.jl, in expression starting on line 12
==================================================================================================[ BUILD ERRORS ]===================================================================================================
WARNING: PyCall had build errors.
- packages with build errors remain installed in /home/users/elijah/.julia/v0.4
- build the package(s) and all dependencies with
Pkg.build("PyCall") - build a single package by running its
deps/build.jlscript
INFO: Package database updated
julia> Pkg.build("PyCall")
INFO: Building PyCall
INFO: PyCall is using python (Python 2.7.3) at /usr/bin/python, libpython = /usr/lib/libpython2.7.so
Not sure if that fixed the problem or not.
Since you ran the validation, does this mean this issue is fixed?
I would say yes, thank you