davidtong28

Pinned Repositories

nf-seqqc
Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data
Language:Nextflow2 3 272
CampyToolBox
An R package for Campylobacter-specific bioinformatic analysis
10
gubmap
An R package for editing, filtering and visualizing recombination data generated from Gubbins
00
MashClustR
R package for clustering and visualizing pairwise Mash distance data
Language:R00
mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Language:Python00
RoaRyVis
A visualization R package for Roary the pangenome pipeline
Language:R00
SNPcompR
An R package for comparing and visualizing multi-VCF files
Language:R00
STAT545
Language:HTML00
stat545-2020
Language:Jupyter Notebook00
temperate-phage-active-prophage-detection
detect temperate phage (active prophage) in assembled bacterial genome sequences
00

davidtong28's Repositories

davidtong28/CampyToolBox
An R package for Campylobacter-specific bioinformatic analysis
10
davidtong28/gubmap
An R package for editing, filtering and visualizing recombination data generated from Gubbins
00
davidtong28/MashClustR
R package for clustering and visualizing pairwise Mash distance data
Language:R00
davidtong28/mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Language:Python00
davidtong28/RoaRyVis
A visualization R package for Roary the pangenome pipeline
Language:R00
davidtong28/SNPcompR
An R package for comparing and visualizing multi-VCF files
Language:R00
davidtong28/STAT545
Language:HTML00
davidtong28/stat545-2020
Language:Jupyter Notebook00
davidtong28/temperate-phage-active-prophage-detection
detect temperate phage (active prophage) in assembled bacterial genome sequences
00
davidtong28/stat545.stat.ubc.ca
Repository that produces the new STAT 545/547 @ UBC website