davised

Senior Bioinformatics Scientist in the Center for Quantitative Life Sciences at Oregon State University (he/him)

Oregon State UniversityCorvallis, OR

Pinned Repositories

AGAT
Another Gtf/Gff Analysis Toolkit
Language:Perl0 0 00
alv
A console-based alignment viewer
Language:Python0 0 00
automlsa2
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Language:Python5 0 80
automlsa2-examples
Example datasets for automlsa2 script.
1 1 01
bakta
Rapid & standardized annotation of bacterial genomes & plasmids
Language:Python0 0 00
BASTA
Basic Sequence Taxonomy Annotator
Language:Python0 0 00
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Language:Python0 0 00
get_assemblies
Download assembly files from NCBI
Language:Python12 2 41
moore-2021-acetone
Acetone monooxygenase (SAR11_0845) homolog analysis using Tara metatranscriptome data
Language:R1 1 00
seqIO_extract
Language:Python2 1 01

davised's Repositories

davised/seqIO_extract
Language:Python2 1 01
davised/DEICODE
Robust Aitchison PCA from sparse count data
Language:JavaScript0 0
davised/demoshell
Simplified shell for giving live demos
Language:Python0 0
davised/LINKVIEW
DNA序列比对结果可视化展示工具
Language:Python0 0
davised/LS-BSR
Large scale Blast Score Ratio (BSR) analysis
Language:Python1 0
davised/neovim-settings
Language:Vim script1 0
davised/readme-template
1 0
davised/shotcleaner
A high-throughput and modular workflow to quality control shotgun metagenomic DNA sequence libraries
Language:Perl0 0
davised/vimrc
Language:Vim script1 0
davised/whatshap
Read-based phasing of genomic variants, also called haplotype assembly
Language:C++0 0