davisidarta

AtheroIntegration

code

Compilation of R and Python programming codes

Cytocipher

Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.

davisidarta

davisidarta.github.io

dbMAP

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.

DEMaP

Denoised Embedding Manifold Preservation - Repo for # manuscript benchmarking

fastlapmap

Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's implementation and escalates linearly beyond 10e6 samples.

humanlung

Code for the human lung integrated cell atlas generation as in Sidarta-Oliveira et al.

topometry

Systematically learn and evaluate manifolds from high-dimensional data

davisidarta/topometry

Systematically learn and evaluate manifolds from high-dimensional data

davisidarta/dbMAP

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.

davisidarta/fastlapmap

Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's implementation and escalates linearly beyond 10e6 samples.

davisidarta/humanlung

Code for the human lung integrated cell atlas generation as in Sidarta-Oliveira et al.

davisidarta/AtheroIntegration

davisidarta/code

Compilation of R and Python programming codes

davisidarta/Cytocipher

Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.

davisidarta/davisidarta

davisidarta/davisidarta.github.io

davisidarta/DEMaP

Denoised Embedding Manifold Preservation - Repo for # manuscript benchmarking

davisidarta/topometry-notebooks

A collection of notebooks for exploring high-dimensional data with manifold learning approaches.

davisidarta/TreinamentoSingleCell

Single-cell analysis training in python in Brazilian Portuguese.

davisidarta/Sanity

Filtering of Poison noise on a single-cell RNA-seq UMI count matrix