Build a docker image with latest R and packages from tidyverse, Bioconductor and friends.
This image is available from: davismcc/r-tidybioc-img
This repo defines an installatin of the latest version of R bootstrapping the rocker/verse and bioconductor/release_core2 docker images.
This repo adds the following packages (if not already installed in the bootstrapped images):
- apcluster
- batchtools
- bayesplot
- bblme
- clustermq
- coda
- cowplot
- d3heatmap
- data.table
- devtools
- DiagrammeR
- docopt
- DT
- dynamicTreeCut
- e1071
- future
- future.batchtools
- flexmix
- formatR
- fpc
- GGally
- ggbeeswarm
- ggdendro
- ggmcmc
- ggpubr
- ggrepel
- ggridges
- ggsci
- ggthemes
- ggtree
- glmnet
- gdata
- gplots
- gtools
- greta
- keras
- lattice
- latticeExtra
- lintr
- lme4
- Matrix
- MatrixModels
- matrixStats
- microbenchmark
- mvoutlier
- NMF
- packrat
- pheatmap
- pryr
- qvalue
- RColorBrewer
- roxygen2
- rmote
- rprojroot
- scales
- superheat
- tensorflow
- testthat
- tufte
- UpSetR
- VGAM
- viridis
- wesanderson
- xtable