/Confidence

Visualization of model confidence on genomic sequences

Primary LanguageHTML

Confidence

Visualization of model confidence on genomic sequences

Image of CRISPR region

installation

git clone https://github.com/hiddengenome/Confidence.git
cd Confidence
virtualenv env
source env/bin/activate
pip install argparse numpy h5py flask

Usage

Run the Server with python 2 and point your browser to http://127.0.0.1:5000/

python visualize.py -i examples/crispr.h5

To visualize a subset of a larger genome, you can use -from and -to parameters

python visualize.py -i example/full.h5 -from 1000 -to 2500