Pinned Repositories
arborize
A Python package that allows Arbor-like descriptions of cell models for NEURON.
astrocyte
Packager for Glia. Distribute your models amongst the stars
bsb-core
The Brain Scaffold Builder
cereb-nest
Module for NEST simulator developed in the Project CerebNEST, aiming to recreate and simulate in NEST realistic cerebellar-inspired models.
dystonia_ebcc
Code to simulate mouse models of dystonia during EyeBlink Classical Conditioning (EBCC), described in Geminiani et al., Front Syst Neurosci, 2022.
extra-cereb-nest
Extension module for the NEST simulator providing models for closed loop simulations with the cerebellum
glia
NMODL asset manager
models
Collection of neuron models for the NEURON simulator
patch
A Pythonic object-oriented drop-in replacement for the Python interface to NEURON
scaffold
Large scale simulation of morphologically detailed networks of neurons, with out of the box topology for the cerebellum.
Brain and Behavioral Sciences Laboratory Pavia's Repositories
dbbs-lab/bsb-core
The Brain Scaffold Builder
dbbs-lab/bsb
Metadata repository for the `bsb` package, which installs the `bsb-core` framework and a default set of plugins.
dbbs-lab/cereb-nest
Module for NEST simulator developed in the Project CerebNEST, aiming to recreate and simulate in NEST realistic cerebellar-inspired models.
dbbs-lab/glia
NMODL asset manager
dbbs-lab/models
Collection of neuron models for the NEURON simulator
dbbs-lab/patch
A Pythonic object-oriented drop-in replacement for the Python interface to NEURON
dbbs-lab/arborize
A Python package that allows Arbor-like descriptions of cell models for NEURON.
dbbs-lab/astrocyte
Packager for Glia. Distribute your models amongst the stars
dbbs-lab/dystonia_ebcc
Code to simulate mouse models of dystonia during EyeBlink Classical Conditioning (EBCC), described in Geminiani et al., Front Syst Neurosci, 2022.
dbbs-lab/annotateCerebellum
Tools to visualize and correct cerebellum volumetric annotations
dbbs-lab/bsb-arbor
Arbor simulation adapter for the BSB framework
dbbs-lab/bsb-brian
BSB plugin for the Brian simulator
dbbs-lab/bsb-hdf5
The HDF5 storage engine of the BSB
dbbs-lab/bsb-json
JSON configuration parser and tooling for the BSB
dbbs-lab/bsb-nest
NEST simulation adapter for the BSB framework
dbbs-lab/bsb-neuron
NEURON simulation adapter for the BSB framework
dbbs-lab/bsb-plotting
Plotting tools for the BSB framework
dbbs-lab/bsb-test
Helps component developers build tests for BSB components
dbbs-lab/bsb-webstack
dbbs-lab/bsb-yaml
YAML parser for the BSB framework
dbbs-lab/catalogue
Mechanism catalogue for the DBBS NMODL asset collection.
dbbs-lab/ccio
Integrated CC and IO model
dbbs-lab/dbbs-mod-collection
Glia package containing all our mod files
dbbs-lab/dbbs-tools
Repository to build our Docker image with all the required tools that are used in the laboratory.
dbbs-lab/deschepper-etal-2021
Images and videos used in De Schepper et. al. (2021)
dbbs-lab/modelling-intro
Introductory course to neural modelling
dbbs-lab/nrn-diff
NEURON object differ
dbbs-lab/sphinxext-bsb
Sphinx extension for the BSB documentation
dbbs-lab/state-estimator
Code implementing a spiking state estimator as in Grillo et al., 2022
dbbs-lab/student-umbrella
Students, don't let your enthousiasm get rained on. This umbrella will (soon) cover all the material you need to be familiar with for a successful thesis at our lab