/ScatMatch

Functions to aid error filtering from SNP genotype data and determine group majorities

Primary LanguageRMIT LicenseMIT

ScatMatch

Project Status: Active – The project has reached a stable, usable state and is being actively developed. Lifecycle: stable GitHub issues Last-changedate Github top language DOI R-CMD-check

The goal of ScatMatch is to provide a range of functions and visualisations to assist in cleaning and filtering SNP genotype data from non-invasively collected samples (e.g. scats) and to cluster samples into groups to identify source individuals. Functions are also provided to summarise and map individual capture histories.

Installation

You can install the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("dbca-wa/ScatMatch")

Help Files

All functions within ScatMatch have the usual R help files, however the best place to see these and some helpful articles describing the intended workflow is the ScatMatch website