Repository for training and how-to manuals for working on the high performance computing server as Penn State.
ACIManual.docx Working document accessing and using the ACI system. Includes some basic Linux functions.
pbsScripting Manual for creating and running PBS scripts on the ACI batch system. Includes shell program for automated creating of job scripts.
convertingDicomToNifti Manual for working in MRI data on the system, including how to convert data to standard NIFTI format.
fmriprep Manual for setting up and running fmriprep, a standardized pipeline for MR data preprocessing.