Pinned Repositories
COG
Scripts and steps for making a consolidated COG database file for tools like DIAMOND.
dbespiatykh
gopiscator
GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.
Kornienko_et_al_2022_phagePCRtyping
kvarq
Targeted and Mapping-Free Variant Calling in FastQ Reads of Bacterial Genomes
RDscan
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
TB-gen
Web-app to explore Mycobacterium tuberculosis complex
TBGenoPipe
Tuberculosis Genomic Pipeline
tblg
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
dbespiatykh's Repositories
dbespiatykh/RDscan
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
dbespiatykh/TB-gen
Web-app to explore Mycobacterium tuberculosis complex
dbespiatykh/tblg
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
dbespiatykh/COG
Scripts and steps for making a consolidated COG database file for tools like DIAMOND.
dbespiatykh/dbespiatykh
dbespiatykh/gopiscator
GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.
dbespiatykh/Kornienko_et_al_2022_phagePCRtyping
dbespiatykh/kvarq
Targeted and Mapping-Free Variant Calling in FastQ Reads of Bacterial Genomes
dbespiatykh/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
dbespiatykh/TBGenoPipe
Tuberculosis Genomic Pipeline
dbespiatykh/TBvar
Variant detection and lineage barcoding of Mycobacterium tuberculosis