Computational Genome Analysis Platform
The Computational Genome Analysis Platform (CGAP) is an intuitive, open-source analysis tool designed to support complex research & clinical genomics workflows.
Pinned Repositories
cgap-pipeline
cgap-pipeline-contribution
pipeline modules contributed to cgap through external collaboration
cgap-pipeline-main
main repository for cgap pipeline
cgap-pipeline-SNV-somatic
pipeline for somatic single-nucleotide variants and small indels
cgap-pipeline-SV-germline
pipeline for germline structural variants
cgap-portal
Data portal for the DBMI-BGM CGAP initiative
foursight-cgap
Providing insight into your application using AWS infrastructure.
granite
A collection of software to work with genomic variants
higlass-cohort
Cohort track for Higlass
xTea-germline
pipeline implementation of xTea algorithm to detect transposable element insertions
Computational Genome Analysis Platform's Repositories
dbmi-bgm/cgap-portal
Data portal for the DBMI-BGM CGAP initiative
dbmi-bgm/granite
A collection of software to work with genomic variants
dbmi-bgm/cgap-pipeline-SV-germline
pipeline for germline structural variants
dbmi-bgm/cgap-pipeline-SNV-somatic
pipeline for somatic single-nucleotide variants and small indels
dbmi-bgm/foursight-cgap
Providing insight into your application using AWS infrastructure.
dbmi-bgm/cgap-pipeline-contribution
pipeline modules contributed to cgap through external collaboration
dbmi-bgm/higlass-cohort
Cohort track for Higlass
dbmi-bgm/xTea-germline
pipeline implementation of xTea algorithm to detect transposable element insertions
dbmi-bgm/cgap-pipeline-base
base pipeline components
dbmi-bgm/cgap-pipeline-main
main repository for cgap pipeline
dbmi-bgm/cgap-pipeline-SNV-germline
pipeline for germline single nucleotide variants and small indels
dbmi-bgm/cgap-pipeline-upstream-sentieon
upstream pipeline using Sentieon
dbmi-bgm/magma
A collection of tools to manage meta-workflows automation
dbmi-bgm/portal-pipeline-utils
pipeline utilities
dbmi-bgm/SubmitCGAP
Support for file submissions related to CGAP.
dbmi-bgm/.github
Contains README for the organization.
dbmi-bgm/cgap-annotations
dbmi-bgm/cgap-governance
Governance, legal and policy information related to the Computational Genome Analysis Platform (CGAP)
dbmi-bgm/cgap-issues
A place to collect cross-repo issues, questions, and bug reports related to the CGAP project
dbmi-bgm/cgap-pipeline-cohort
dbmi-bgm/cgap-pipeline-hartwig
dbmi-bgm/cgap-pipeline-somatic-sentieon
pipeline for somatic SNVs, INDELs, and SVs using Sentieon
dbmi-bgm/cgap-pipeline-SV-somatic
pipeline for somatic structural variants
dbmi-bgm/cgap-pipeline-upstream-GATK
upstream pipeline using GATK
dbmi-bgm/cgap-pipeline-validation
dbmi-bgm/cgap-scripts
dbmi-bgm/higlass-data
Package that creates data files for CGAP's Higlass browsers
dbmi-bgm/higlass-general-vcf
Plugin track that can visualize general VCF files
dbmi-bgm/higlass-sv
Display Structural Variants in Higlass
dbmi-bgm/udn-browser