dbogdano

Pinned Repositories

pheniqs
Fast and accurate sequence demultiplexing
Language:C++27 2 294
concise
Concise: Keras extension for regulatory genomics
Language:Jupyter Notebook0 0 01
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python0 0 00
scSLR
Language:Jupyter Notebook0 2 00
UMICollapse
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
Language:Java0 0 00
MMSplice_MTSplice
Tissue-specific variant effect predictions on splicing
Language:Jupyter Notebook40 8 4521
rbpnet
Language:Python17 1 74
DeepRiPe
Language:Jupyter Notebook24 3 76
spatial
spatial sequencing project @ Ye lab
Language:Jupyter Notebook1 3 00

dbogdano's Repositories

dbogdano/concise
Concise: Keras extension for regulatory genomics
Language:Jupyter Notebook0 0 01
dbogdano/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python0 0 00
dbogdano/scSLR
Language:Jupyter Notebook0 2 00
dbogdano/UMICollapse
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
Language:Java0 0 00