Pinned Repositories
arrayexpress-cram-submission
A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Bio-DB-HTS
Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
brew
🍺 The missing package manager for macOS
copy-of-eg-pipelines
coverage
Scripts for looking at 'coverage' of various Whole Genome Alignment methods across any given set of 'ranges' using Set::IntRange
cpanfiles
A collection of additional cpanfiles that have no natural home with any project
Dream_TF_net
Convolutional Neural Networks for the Encode-Dream Transcription Factor Binding Challenge
eg-biomart-perl
Ensembl Genomes specific fork of BioMart martview. Contains modifications to support Ensembl Genomes databases.
eg-web-common
modules/files required to set up any of the EG genome browsers
dbolser-ebi's Repositories
dbolser-ebi/arrayexpress-cram-submission
A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)
dbolser-ebi/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
dbolser-ebi/Bio-DB-HTS
Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
dbolser-ebi/brew
🍺 The missing package manager for macOS
dbolser-ebi/copy-of-eg-pipelines
dbolser-ebi/coverage
Scripts for looking at 'coverage' of various Whole Genome Alignment methods across any given set of 'ranges' using Set::IntRange
dbolser-ebi/cpanfiles
A collection of additional cpanfiles that have no natural home with any project
dbolser-ebi/Dream_TF_net
Convolutional Neural Networks for the Encode-Dream Transcription Factor Binding Challenge
dbolser-ebi/eg-web-plants
modules required to set up EG Plants mirror
dbolser-ebi/eg-web-pre
modules/files required to set up any of the EG pre website
dbolser-ebi/ensembl
The Ensembl Core Perl API and SQL schema
dbolser-ebi/ensembl-analysis
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
dbolser-ebi/ensembl-compara
The Ensembl Compara Perl API and SQL schema
dbolser-ebi/ensembl-datacheck
Code for checking Ensembl databases during release production
dbolser-ebi/ensembl-funcgen
Ensembl Funcgen Perl API and SQL schema
dbolser-ebi/ensembl-prodinf-core
dbolser-ebi/ensembl-production
Ensembl Production code
dbolser-ebi/ensembl-retreat-2018
Some files used by the "MPI/multi-threaded software in eHive/LSF" session during the Ensembl retreat 2018
dbolser-ebi/ensembl-variation
The Ensembl Variation Perl API and SQL schema
dbolser-ebi/ensj-healthcheck
Ensembl's Automated QC Framework
dbolser-ebi/homebrew-science
:beer::microscope: Scientific formulae for the Homebrew package manager
dbolser-ebi/lastz
Program for aligning DNA sequences, a pairwise aligner.
dbolser-ebi/lib
dbolser-ebi/mysqlnag
Slow like an old nag
dbolser-ebi/satsuma2
dbolser-ebi/Scratch
Nonsense
dbolser-ebi/TeachingMaterial
RNA-seq data analysis practical
dbolser-ebi/transPLANT-Search
The Solr implementation of the transPLANT integrated search schema
dbolser-ebi/tutorials
Collection of tutorials for various libraries and technologies
dbolser-ebi/VCFLoad-simple
A tool for converting VCF into TSV suitable for loading into the Ensembl Variation schema