Pinned Repositories
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
Chiron
A basecaller for Oxford Nanopore Technologies' sequencers
CHM-eval
Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
dcfmodel.github.io
Personal homepage
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
deeplearning-biology
A list of deep learning implementations in biology
DeepLearning-in-Bioinformatics
For anyone who are eager to applying deep learning in bioinformatics!
deepnano
dcfmodel's Repositories
dcfmodel/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
dcfmodel/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
dcfmodel/Chiron
A basecaller for Oxford Nanopore Technologies' sequencers
dcfmodel/CHM-eval
dcfmodel/Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
dcfmodel/dcfmodel.github.io
Personal homepage
dcfmodel/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
dcfmodel/deeplearning-biology
A list of deep learning implementations in biology
dcfmodel/DeepLearning-in-Bioinformatics
For anyone who are eager to applying deep learning in bioinformatics!
dcfmodel/deepnano
dcfmodel/DeepSVR
dcfmodel/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dcfmodel/deepwalk
DeepWalk - Deep Learning for Graphs
dcfmodel/gatk
Official code repository for GATK versions 4 and up
dcfmodel/graphnn
Training computational graph on top of structured data (string, graph, etc)
dcfmodel/hap.py
Haplotype VCF comparison tools
dcfmodel/keras
Deep Learning for humans
dcfmodel/LINE
LINE: Large-scale information network embedding
dcfmodel/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dcfmodel/nanopolish
Signal-level algorithms for MinION data
dcfmodel/nanopore-methylation
dcfmodel/PairHMM
Optimization of a Haplotype PairHMM class for GPU processing
dcfmodel/Platypus
Platypus Variant Caller
dcfmodel/ProcessGroupMonitor
A sample tool to monitor a process group and log it CPU and MEM used.
dcfmodel/repeatseq
Accurate microsatellite genotypes from high-throughput resequencing data
dcfmodel/rnn-gene-prediction
Deep Learning Class Project
dcfmodel/seqan
SeqAn's official repository.
dcfmodel/tensorflow-wavenet
A TensorFlow implementation of DeepMind's WaveNet paper
dcfmodel/wavenet
Keras WaveNet implementation
dcfmodel/WorldHello
test using git bash