dchebotarov

3k-SNP-paper

Custom code for 3,000 rice genomes paper

alpha-significance-threshold

Compute significance threshold for a genome-wide association study using estimated effective number of independent tests.

dcheb.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

GAPIT

Genomic Association and Prediction Integrated Tool

gatk4-var-calling-pipeline

A pipeline for variant calling based on best practices for GATK 4.0

gemma-gwas-scripts

A collection of scripts to aid mixed linear model based GWAS with GEMMA (https://github.com/genetics-statistics/GEMMA)

gra-site-content

haplotool-docs

Documentation for GOBii HaploTool

Q-aggr

varcall-snakemake-test

Using snakemake-workflows/dna-seq-gatk-variant-calling as a template

dchebotarov/3k-SNP-paper

Custom code for 3,000 rice genomes paper

dchebotarov/gemma-gwas-scripts

A collection of scripts to aid mixed linear model based GWAS with GEMMA (https://github.com/genetics-statistics/GEMMA)

dchebotarov/gatk4-var-calling-pipeline

A pipeline for variant calling based on best practices for GATK 4.0

dchebotarov/alpha-significance-threshold

Compute significance threshold for a genome-wide association study using estimated effective number of independent tests.

dchebotarov/dcheb.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

dchebotarov/GAPIT

Genomic Association and Prediction Integrated Tool

dchebotarov/gra-site-content

dchebotarov/haplotool-docs

Documentation for GOBii HaploTool

dchebotarov/hugo-paper-now

writing scientific article with hugo (port of PeerJ/paper-now)

dchebotarov/Q-aggr

dchebotarov/varcall-snakemake-test

Using snakemake-workflows/dna-seq-gatk-variant-calling as a template

dchebotarov/nextflow-variant-calling

dchebotarov/paper-now

Create, edit and display a journal article, entirely in GitHub

dchebotarov/ped2infocalc

Convert ped/map fileset into infocalc format