Chapter submission for MIMB Summer 2021
- Brief literature review
- Data formats -- what is required, depending on availability
- Chr start stop
- Cg annotation (illumina)
- Other → some method for relating genome location to binding
- Pipeline:
0. FIMO scan & open-access data
- (py)bedtools
- integrating
- Integrating into netzoo bipartite
- Integrating into other GRN framework 1. Smaller GRN models (TF-gene subsets) could just merge with methyl-motif and reduce their estimates where overlap / downweight (GRN estimate x 1- avg meth ratio)
- Benchmarking against ChIP-seq