ddiazdom
Postdoctoral researcher at the University of Helsinki working on compact data structures and compression-aware algorithms for Bioinformatics
University of HelsinkiFinland
Pinned Repositories
detectRUNS-fork
detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
genome_variant_simulator
A simple tool to simulate genomes for compression experiment purposes
grid
Implementation of the data structure of Makinen and Navarro 2007 for encoding grids.
grlBWT
Efficient construction of the BWT using string compression
lcg
Locally-consistent grammar compression
LMS-based-self-index
A grammar-based self-index that relies on locally-consistent parsing.
personal_page
A one-stop, clean and minimal mobile-friendly Jekyll theme for your academic homepage
kaarme
Hash table for storing long canonical k-mers. Used for a k-mer counter.
ddiazdom's Repositories
ddiazdom/grlBWT
Efficient construction of the BWT using string compression
ddiazdom/LMS-based-self-index
A grammar-based self-index that relies on locally-consistent parsing.
ddiazdom/detectRUNS-fork
detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
ddiazdom/genome_variant_simulator
A simple tool to simulate genomes for compression experiment purposes
ddiazdom/grid
Implementation of the data structure of Makinen and Navarro 2007 for encoding grids.
ddiazdom/lcg
Locally-consistent grammar compression
ddiazdom/personal_page
A one-stop, clean and minimal mobile-friendly Jekyll theme for your academic homepage