ddofer

asap

Amino-Acid Sequence Annotation Predictor (ASAP)

CAH

Code used for Cards Against Humanity EMNLP paper

Data-Analysis-and-Machine-Learning-Projects

Repository of code and data for my data analysis and machine learning projects.

ddofer.github.io

Dan's Blog

DeepLearningTutorials

Deep Learning Tutorial notes and code. See the wiki for more info.

neuroPID

NeuroPID is a prediction tool for Neuropeptide Precursor (NPP) and Neuromodulator Proteins. NeuroPID provides a list of candidate NPPs and neuromodulators at a genomic scale from unexplored proteomes using protein FASTA sequences as input.

ProFET

ProFET: Protein Feature Engineering Toolkit for Machine Learning

sklearn_pycon2014

Repository containing files for my PyCon 2014 scikit-learn tutorial.

talk

Slides and talks from presentations, workshops, etc'

Trends

Code & datasets for "What’s next? Forecasting scientific research trends"

ddofer/asap

Amino-Acid Sequence Annotation Predictor (ASAP)

ddofer/talk

Slides and talks from presentations, workshops, etc'

ddofer/CAH

Code used for Cards Against Humanity EMNLP paper

ddofer/Trends

Code & datasets for "What’s next? Forecasting scientific research trends"

ddofer/ML

Machine Learning & research side-projects

ddofer/Hack

Hackathon code & tricks

ddofer/learning

Becoming 1% better at data science everyday

ddofer/microRNA-Protein-Regulation

Inferring miRNA regulation: A proteome perspective

ddofer/OpenTargets-DiseaseSubtype

Discovery of disease Subtypes in Open Targets

ddofer/PatentTransformer

Transformer models for Augmented Inventing

ddofer/ProteinBert

Protein language models using attention models

ddofer/ddofer.github.io

Dan's Blog

ddofer/Ankh-multiLabel

Ankh: Optimized Protein Language Model

ddofer/BERT-keras

Keras implementation of BERT with pre-trained weights

ddofer/Booking-Challenge

Booking.com Challenge - WebTour 2021 - ACM WSDM - ML Code

ddofer/clean-code-ml

:bathtub: Clean Code concepts adapted for machine learning and data science. Now a free video series: https://bit.ly/3a4k9x3

ddofer/Deep-Learning-Tinder

Simple Tinder algorithm able to swipe left and right based on the recommendations of a pre-trained deep neural network (Machine Learning).

ddofer/DR-BERT

ddofer/HW

Homework public repo

ddofer/macaw_evaluation

ddofer/mars-biohackathon

Predicting thermostability using a VAE and prediction from the latent space.

ddofer/MinimalIsAllYouNeed

<In Development> Transformers for Keras that support sklearn's .fit .predict .

ddofer/PeerRead

Data and code for Kang et al., NAACL 2018's paper titled "A Dataset of Peer Reviews (PeerRead): Collection, Insights and NLP Applications"

ddofer/PIPR

ddofer/proteinA

Data

ddofer/ProteinHumVir

Code & data for "Protein Language Models Expose Viral Mimicry and Immune Escape"

ddofer/Python-Feature-Engineering-Cookbook

Python Feature Engineering Cookbook, published by Packt

ddofer/sentimentarcs_notebooks

SentimentArcs: a large ensemble of dozens of sentiment analysis models to analyze emotion in text over time

ddofer/tabnet

PyTorch implementation of TabNet paper

ddofer/WandDB-ProtBert-example

Example ProtoBert/Transformer protein deep learning that uses wandb's features.