Pinned Repositories
academic-kickstart
alpine-singularity
test singularity definition
bbcRNA
bbcRNA: An R package for facilitating RNA-Seq analysis
bbcRNA-singularity
biscuit_blaster
CDseq
Circle Damage Sequencing (CD-seq) Analysis workflow
chipseq_workflow
containers
cptac_singularity
deanpettinga.github.io
personal website
deanpettinga's Repositories
deanpettinga/academic-kickstart
deanpettinga/alpine-singularity
test singularity definition
deanpettinga/bbcRNA
bbcRNA: An R package for facilitating RNA-Seq analysis
deanpettinga/bbcRNA-singularity
deanpettinga/biscuit_blaster
deanpettinga/CDseq
Circle Damage Sequencing (CD-seq) Analysis workflow
deanpettinga/chipseq_workflow
deanpettinga/containers
deanpettinga/cptac_singularity
deanpettinga/deanpettinga.github.io
personal website
deanpettinga/demultiplex
Code for demultiplexing NovaSeq, NextSeq and iSeq. There is also a separate script for single-cell atac-seq
deanpettinga/docker-bamtofastq
deanpettinga/docker-bbcRNA
deanpettinga/docker-beadarrayfiles
docker image recipe for gtc conversion with Illumina/BeadArrayFiles
deanpettinga/docker-streampipe
deanpettinga/docker-TEtranscripts
deanpettinga/ecc_caller
ecc_caller is a pipeline designed to take Illumina NovaSeq paired end sequencing reads generated from isolated circular DNA and call eccDNA forming regions.
deanpettinga/ecc_workflow
deanpettinga/edger-singularity
singularity container for edgeR
deanpettinga/exome_somatic_snv
call somatic SNVs from whole exome sequence using tumor only (no matched normal)
deanpettinga/iaap-cli
deanpettinga/personal_website
deanpettinga/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
deanpettinga/rnaseq_workflow
snakemake workflow for bulk RNA-seq workflow using STAR-edgeR
deanpettinga/scrnaseq_workflow
deanpettinga/subset-bam