Pinned Repositories
BA-Net-kidney
Code for [MLMI 2019] [KiPA22 Challenge] [AMOS 2022 Challenge] [MICCAI 2022 Workshop] Boundary-Aware Network for Medical Image Segmentation.
CTPelvic1K
Resources of the paper “Deep Learning to Segment Pelvic Bones: Large-scale CT Datasets and Baseline Models”.
easyappointments
:date: Easy!Appointments - Self Hosted Appointment Scheduler
LightweightHL7Services
Very basic GUI to send & receive HL7 messages using HAPI
LungCancerScreeningRadiomics
Lung cancer screening radiomics
MarkerlessHNGTVTracking
Code used to create the results described in the paper "A conditional generative adversarial network approach for segmenting head and neck tumors in kV images acquired during radiation therapy"
matRad
An open source multi-modality radiation treatment planning sytem
nnUNet-totalseg
s4s-fhir-broker
This web application is part of the imaging extension to the NIH sync for science program. It accepts RESTful calls on behalf of an EHR and brokers them to existing PACS.
TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
deeponcology's Repositories
deeponcology/matRad
An open source multi-modality radiation treatment planning sytem
deeponcology/nnUNet-totalseg
deeponcology/TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
deeponcology/AI-Deep-Learning-Lab-2023
deeponcology/awesome-3d-human-reconstruction
deeponcology/CADLab
Imaging Biomarkers and Computer-Aided Diagnosis Laboratory
deeponcology/cbis_ddsm_dataloader
deeponcology/ColonSegNet
Official implementation of ColonSegNet: Real-Time Polyp Segmentation (Used in NVIDIA Clara Holoscan App for Polyp Segmentation)
deeponcology/EMBED_Open_Data-mammogram
Data descriptor and sample notebooks for the Emory Breast Imaging Dataset (EMBED) hosted on the AWS Open Data Program
deeponcology/HaN5K
[In Progressing]HaN5K: A project to develop foundation models for structure delineation in head and neck radiotherapy based on more than 5K CT scans and 10K clinical volumetric organs.
deeponcology/hanseg_challenge
deeponcology/HE_IHC_HN_analysis
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
deeponcology/Kvasircapsule-SEG
NanoNet: Real-Time Polyp Segmentation in Capsule Endoscopy & Colonoscopy [Contains an open-access capsule endoscopy dataset (2021 IEEE CBMS)]
deeponcology/Llama-2-GGML-Medical-Chatbot
Llama2-Medical-Chatbot is a medical chatbot that uses the Llama-2-7B-Chat-GGML model and the pdf The Gale Encyclopedia of Medicine, Volume 1, 2nd Edition. It is still under development, but it has the potential to be a valuable tool for patients, healthcare professionals, and researchers.
deeponcology/lynference
Repository for learning and inference w.r.t. our project on lymphatic progression in head & neck cancer
deeponcology/Mixed_supervision
MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.
deeponcology/MRI-Linac_SuperResolution
Integrating deep learning into MRI and MRI-guided radiation therapy.
deeponcology/nnuNetv1_deployment
deeponcology/OpenDXMC
Monte Carlo radiation dose scoring application for diagnostic x-ray imaging
deeponcology/PNS-Net
2021-MICCAI-Progressively Normalized Self-Attention Network for Video Polyp Segmentation
deeponcology/PortPy
Opensource radiation treatment planning system in Python [AAPM'23]
deeponcology/pyKinectAzure
Python library to run Kinect Azure DK SDK functions
deeponcology/rtdsm-radiotherapy
A python package to calculate radiation dose-surface maps from radiotherapy treatment plans.
deeponcology/SegRap2023
[SegRap2023]A challenge about organ-at-risk and gross-tumor-volume segmentation in adaptive radiotherapy hosted on MICCAI2023.
deeponcology/segrap2023-winning
Codes of model wining the SegRap MICCAI challenge 2023.
deeponcology/SegReg-HaN-OAR-seg
[ISBI 2024] SegReg: Segmenting OARs by Registering MR Images and CT Annotations
deeponcology/TCIA_Notebooks
Notebooks for working with The Cancer Imaging Archive datasets
deeponcology/U-Mamba-ULS-winner
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
deeponcology/VICTRE-DBT-VIIP
Virtual Imaging Clinical Trial for Regulatory Evaluation
deeponcology/VPS
Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"