/pipeline_hisat2_single

Primary LanguagePython

This repo is a modified version of the pipeline_rnaseq_hisat2 adapted from @OBDS-Training/pipeline_rnaseq_hisat2 (https://github.com/OBDS-Training/pipeline_rnaseq_hisat2)

Modified to run single-end RNA-seq library format and has an additional task to run Picard CollectRnaseqMetrics

originally written by

  • Kevin Rue-Albrecht (@kevinrue) to work on paired-end fastq files

modified by

  • Devika Agarwal (@deevdevil) to work on unpaired fastqs and also run Picard::CollectRnaSeqMetrics