defendant602's Stars
olgabot/rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
Psy-Fer/deeplexicon
Signal based nanopore RNA demultiplexing with convolutional neural networks
a-slide/NanoCount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
epi2me-labs/wf-transcriptomes
biocorecrg/master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
GeneDx/pgr-tk
PGR-TK: Pangenome Research Tool Kit
lilab-bcb/cumulus
Cloud-based scalable and efficient single-cell genomics workflows
igvteam/igv-notebook
Module for embedding igv.js in an IPython notebook
gosling-lang/gos
A declarative interactive genomics visualization library for Python.
PacificBiosciences/HiFi-16S-workflow
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
bioinform/rnacocktail
vibansal/HapCUT2
software tools for haplotype assembly from sequence data
LappalainenLab/lorals
data-science-sequencing/data-science-sequencing.github.io
Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
mummer4/mummer
Mummer alignment tool
stevekm/IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
zqfang/GSEApy
Gene Set Enrichment Analysis in Python
reneshbedre/bioinfokit
Bioinformatics data analysis and visualization toolkit
junjunlab/transPlotR
An elegant package to visualize gene structures
junjunlab/scRNAtoolVis
Useful functions to make your scRNA-seq plot more cool!
meiosis97/Sincast
This is the very first Sincast version!
biowdl/RNA-seq
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
openwdl/wdl
Workflow Description Language - Specification and Implementations
clindet/bget
Portable command-line tool to query bioinformatics APIs, data, databases and files.
jeffdaily/parasail-python
Python bindings for the parasail C library.
gatk-workflows/gatk4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
moold/ParallelTask
A simple and lightweight parallel task engine
immunogenomics/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
josiegleeson/BamSlam
Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
sunduanchen/Scissor
Scissor package