Pinned Repositories
brite-workshop-R
Instructional materials in basic R programming & a walkthrough of an RNA-seq differential expression analysis
celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
celda-compbiomed
Bayesian Hierarchical Modeling for Clustering Single Cell RNA-Seq Data
cruzdb
python access to UCSC genomes database
definitelysean.github.io
enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
feature-viewer
Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
sgaphd
Sean Gets A PhD: Silly Utility Functions
simple-microarray-analysis
Some examples of simple analyses you can perform on microarray data from the comfort of your own home!
tableONE
A simple package for making "Table One" study population tables
definitelysean's Repositories
definitelysean/enrichR
A hacky little interface to call the Enrichr functional enrichment tool from R.
definitelysean/sgaphd
Sean Gets A PhD: Silly Utility Functions
definitelysean/brite-workshop-R
Instructional materials in basic R programming & a walkthrough of an RNA-seq differential expression analysis
definitelysean/celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
definitelysean/celda-compbiomed
Bayesian Hierarchical Modeling for Clustering Single Cell RNA-Seq Data
definitelysean/cruzdb
python access to UCSC genomes database
definitelysean/definitelysean.github.io
definitelysean/feature-viewer
Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
definitelysean/simple-microarray-analysis
Some examples of simple analyses you can perform on microarray data from the comfort of your own home!
definitelysean/tableONE
A simple package for making "Table One" study population tables
definitelysean/headlessGSEA
Drive the Broad Institute GSEA Application From R
definitelysean/Inkscape-JPEG-export-extension
This is a small extension that allows to export a selection directly in jpeg format from inkscape. Actually this simply create a tmp png and then convert it to jpeg using imagemagick.
definitelysean/metabolic_modelling_jupyter_tutorial
definitelysean/nf-RNA_Seq_Preprocess
definitelysean/PathoScope
Pathoscope: Species identification and strain attribution with unassembled sequencing data
definitelysean/REDItools2
definitelysean/singleCellTK
definitelysean/varsome-api-client-python
Example client programs for Saphetor's VarSome annotation API