defleury

2016_Leonardi_et_al_rabbit_tso

Code for microbiome analyses conducted in the study of Leonardi et al, "Administration of T. suis ova protects immunocompetent rabbits from DSS colitis but is detrimental to immunosuppressed rabbits"

adjusted_mutual_information

R code for the fast & parallelized calculation of Adjusted Mutual Information between clusterings

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

Schmidt_et_al_2016_community_similarity

Analysis code for a manuscript on community similarity computation

Toolbox_16S

fmt_metastudy

Analysis code for "Drivers and Determinants of Strain Dynamics Following Fecal Microbiota Transplantation" by Schmidt, Li et al

defleury/Schmidt_et_al_2016_community_similarity

Analysis code for a manuscript on community similarity computation

defleury/adjusted_mutual_information

R code for the fast & parallelized calculation of Adjusted Mutual Information between clusterings

defleury/Toolbox_16S

defleury/2016_Leonardi_et_al_rabbit_tso

Code for microbiome analyses conducted in the study of Leonardi et al, "Administration of T. suis ova protects immunocompetent rabbits from DSS colitis but is detrimental to immunosuppressed rabbits"

defleury/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page: