Pinned Repositories
alphafold
Open source code for AlphaFold.
bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
cellpose
a generalist algorithm for cellular segmentation
cosmos-tools
Software tools for Cortical Observation by Synchronous Multifocal Optical Sampling.
fpocket
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
miniforge-images
Container images that include conda-forge's miniforge setup
multifiber
A GUI and library for doing multi-fiber photometry
patchclamp
Scripts for python analysis of patch-clamp recordings
rclone_sync
Runs rclone to sync to Google Drive — Works within an HPC environment — Tries to catch errors gracefully and informatively
two-photon
Common scripts, libraries, and utilities for 2p experiments
Deisseroth Lab at Stanford University's Repositories
deisseroth-lab/multifiber
A GUI and library for doing multi-fiber photometry
deisseroth-lab/cosmos-tools
Software tools for Cortical Observation by Synchronous Multifocal Optical Sampling.
deisseroth-lab/two-photon
Common scripts, libraries, and utilities for 2p experiments
deisseroth-lab/patchclamp
Scripts for python analysis of patch-clamp recordings
deisseroth-lab/alphafold
Open source code for AlphaFold.
deisseroth-lab/cellpose
a generalist algorithm for cellular segmentation
deisseroth-lab/fpocket
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
deisseroth-lab/bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
deisseroth-lab/brainreg_sherlock
deisseroth-lab/data-sharing-examples
deisseroth-lab/miniforge-images
Container images that include conda-forge's miniforge setup
deisseroth-lab/multifiber-mirror
Private (eventually) fork of multifiber repository for new features.
deisseroth-lab/rclone_sync
Runs rclone to sync to Google Drive — Works within an HPC environment — Tries to catch errors gracefully and informatively
deisseroth-lab/CNMF_E
Constrained Nonnegative Matrix Factorization for microEndoscopic data
deisseroth-lab/croat-public
deisseroth-lab/dask-docker
Docker images for dask
deisseroth-lab/datajoint-python
Relational data pipelines for the science lab
deisseroth-lab/dcon-core
Aperture plane light field deconvolution in the cloud
deisseroth-lab/docker-stacks
Ready-to-run Docker images containing Jupyter applications
deisseroth-lab/k8s-node-termination-handler
A solution to gracefully handle GCE VM terminations in kubernetes clusters
deisseroth-lab/starmap
deisseroth-lab/suite2p
cell detection in calcium imaging recordings
deisseroth-lab/TeraStitcher
A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images