Pinned Repositories
bestcopt
Baseline estimation with convex optimization
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
colabfold_chunker_utils
various scripts to break up a long polypeptide sequence into overlapping sequence. For use with colabfold and ChimeraX for stitching the segments back together.
DeconTools
personal collection of image processing / deconvolution experiments
delnatan.github.io
Miscellaneous web pages
emacs-config
My current Emacs configuration
FNNLSa
Python port of FNNLSa algorithm
gem_analysis_utility
miscellaneous Python scripts used in my GEM analysis
Noise2Fast
An implementation of Noise2Fast denoising algorithm
UCSFsaxs
GUI for SAXS analysis, with smearing correction.
delnatan's Repositories
delnatan/FNNLSa
Python port of FNNLSa algorithm
delnatan/UCSFsaxs
GUI for SAXS analysis, with smearing correction.
delnatan/Noise2Fast
An implementation of Noise2Fast denoising algorithm
delnatan/bestcopt
Baseline estimation with convex optimization
delnatan/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
delnatan/colabfold_chunker_utils
various scripts to break up a long polypeptide sequence into overlapping sequence. For use with colabfold and ChimeraX for stitching the segments back together.
delnatan/DeconTools
personal collection of image processing / deconvolution experiments
delnatan/delnatan.github.io
Miscellaneous web pages
delnatan/emacs-config
My current Emacs configuration
delnatan/gem_analysis_utility
miscellaneous Python scripts used in my GEM analysis
delnatan/ibgest
low-frequency background estimation via iterative low-pass filtering and weighted reconstruction
delnatan/misc_image_quant
miscellaneous image quantification routines
delnatan/imaris-file
imaris file reader
delnatan/jupyter
delnatan/napari
napari: a fast, interactive, multi-dimensional image viewer for python
delnatan/napari-GEMbanya
easy GEM analysis with napari
delnatan/napari-gemscape
delnatan/napari-gemspa
fork of Holt lab's gemspa
delnatan/napari-hdf5-hts
simple napari plugin to view multi-well images in HDF5 format
delnatan/napari-imsd
delnatan/napari-linescan
simple pyqtgraph-based intensity profile tool for napari for 2D/3D images
delnatan/PDBtools
Simple python tools to read/write PDB files
delnatan/sizes
sizes: General size distribution program for SAS (small-angle scattering) analysis
delnatan/spinzero_mod
delnatan/spotfitlm
Spot-detection in 2D fluorescence images with Gaussian modelling and fitting
delnatan/UNets-torch
collection of UNets experiments
delnatan/WEA
Single-cell wound-edge analysis
delnatan/xiangyi_ding_et_al
code repo for custom image analysis for XiangYi (Starr-Luxton lab)