Pinned Repositories
bestcopt
Baseline estimation with convex optimization
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
colabfold_chunker_utils
various scripts to break up a long polypeptide sequence into overlapping sequence. For use with colabfold and ChimeraX for stitching the segments back together.
delnatan.github.io
Miscellaneous web pages
emacs-config
My current Emacs configuration
FNNLSa
Python port of FNNLSa algorithm
gem_analysis_utility
miscellaneous Python scripts used in my GEM analysis
misc_image_quant
miscellaneous image quantification routines
Noise2Fast
An implementation of Noise2Fast denoising algorithm
UCSFsaxs
GUI for SAXS analysis, with smearing correction.
delnatan's Repositories
delnatan/FNNLSa
Python port of FNNLSa algorithm
delnatan/UCSFsaxs
GUI for SAXS analysis, with smearing correction.
delnatan/Noise2Fast
An implementation of Noise2Fast denoising algorithm
delnatan/bestcopt
Baseline estimation with convex optimization
delnatan/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
delnatan/colabfold_chunker_utils
various scripts to break up a long polypeptide sequence into overlapping sequence. For use with colabfold and ChimeraX for stitching the segments back together.
delnatan/delnatan.github.io
Miscellaneous web pages
delnatan/emacs-config
My current Emacs configuration
delnatan/gem_analysis_utility
miscellaneous Python scripts used in my GEM analysis
delnatan/misc_image_quant
miscellaneous image quantification routines
delnatan/napari
napari: a fast, interactive, multi-dimensional image viewer for python
delnatan/napari-GEMbanya
easy GEM analysis with napari
delnatan/napari-gemscape
delnatan/napari-gemspa
fork of Holt lab's gemspa
delnatan/napari-hdf5-hts
simple napari plugin to view multi-well images in HDF5 format
delnatan/PDBtools
Simple python tools to read/write PDB files
delnatan/sizes
sizes: General size distribution program for SAS (small-angle scattering) analysis
delnatan/spinzero_mod
delnatan/spotfitlm
Spot-detection in 2D fluorescence images with Gaussian modelling and fitting
delnatan/WEA
Single-cell wound-edge analysis