Pinned Repositories
adamajava
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
adamajava
beacon_v2_test_data
Beacon v2 format data from a publicly available dataset
cromwell
Workflow Execution Engine using WDL
Empire
JPA implementation for RDF
mumbai
Faster position-based slice or lookup on multiple bams
pbspy
Lightweight PBS job submission and monitoring
qasim
Simulate mutations, fragment generation and paired-end HTS reads on diploid genomes
streammd
Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
delocalizer's Repositories
delocalizer/streammd
Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
delocalizer/beacon_v2_test_data
Beacon v2 format data from a publicly available dataset
delocalizer/mumbai
Faster position-based slice or lookup on multiple bams
delocalizer/qasim
Simulate mutations, fragment generation and paired-end HTS reads on diploid genomes
delocalizer/adamajava
delocalizer/cromwell
Workflow Execution Engine using WDL
delocalizer/Empire
JPA implementation for RDF
delocalizer/pbspy
Lightweight PBS job submission and monitoring
delocalizer/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
delocalizer/beacon-v2-Models
Models that leverage the Beacon Framework v2
delocalizer/beacon2_data_validator
Validate JSON data files against the beacon v2 data model.
delocalizer/bioconda-recipes
Conda recipes for the bioconda channel.
delocalizer/cpython
The Python programming language
delocalizer/cutstash
Store trimmed adapters in FASTQ sequence id description.
delocalizer/ega-download-client
A basic Python-based EGA download client
delocalizer/ega_metadata
An incomplete set of subpackages of the private `graflipy` package, for instructional purposes only
delocalizer/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
delocalizer/nextflow-s3fs
An S3 File System Provider for Java 7
delocalizer/pbspro
An HPC workload manager and job scheduler for desktops, clusters, and clouds.
delocalizer/pinto
Pinto: A lightweight framework for mapping Java Beans into RDF and back again
delocalizer/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
delocalizer/python-novice-gapminder
Introduction to Python for non-programmers using gapminder data
delocalizer/quip_classification
delocalizer/r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
delocalizer/rdflib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
delocalizer/styles
Official repository for Citation Style Language (CSL) citation styles.
delocalizer/tutorial
Code review tutorial exercises
delocalizer/velocyto.py
RNA velocity estimation in Python
delocalizer/Vigelint
A pipeline for determining how the number of variants in clinically significant genes change over time
delocalizer/xmlschema
XML Schema validator and data conversion library for Python