denbonte
Postdoctoral researcher @ UniL/SIB, working on imaging genetics. Previously a research scholar at @AIM-Harvard.
CBG @ UniL | Previously @AIM-Harvard @MHubAILausanne, Switzerland
denbonte's Stars
Stability-AI/StableCascade
Official Code for Stable Cascade
cxli233/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
lincolnloop/python-qrcode
Python QR Code image generator
mindee/doctr
docTR (Document Text Recognition) - a seamless, high-performing & accessible library for OCR-related tasks powered by Deep Learning.
prefix-dev/pixi
Package management made easy
HobbitLong/SupContrast
PyTorch implementation of "Supervised Contrastive Learning" (and SimCLR incidentally)
Financial-Times/chart-doctor
Sample files to accompany the FT's Chart Doctor column
theOehrly/Fast-F1
FastF1 is a python package for accessing and analyzing Formula 1 results, schedules, timing data and telemetry
sthalles/SimCLR
PyTorch implementation of SimCLR: A Simple Framework for Contrastive Learning of Visual Representations
rocker-org/rocker
R configurations for Docker
indigo-dc/udocker
A basic user tool to execute simple docker containers in batch or interactive systems without root privileges.
stardist/stardist
StarDist - Object Detection with Star-convex Shapes
killiansheriff/LovelyPlots
Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.
taokz/BiomedGPT
BiomedGPT: A Generalist Vision-Language Foundation Model for Diverse Biomedical Tasks
smazzanti/mrmr
mRMR (minimum-Redundancy-Maximum-Relevance) for automatic feature selection at scale.
giakoumoglou/pyfeats
Open source software for image feature extraction.
yardstick17/image_text_reader
The module extracts text from image using the tesseract-OCR engine. Generally, text present in the images are blur or are of uneven sizes. The image is pre-processed for better comprehension by OCR. This module first makes bounding box for text in images and then normalizes it to 300 dpi, suitable for OCR engine to read.
dnanexus/UKB_RAP
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
FDU-VTS/Awesome-Diabetic-Retinopathy-Detection
Papers and Public Datasets for Diabetic Retinopathy Detection
giakoumoglou/pyssl
Self-Supervised Learning in PyTorch
KitwareMedical/dicom-anonymizer
Tool to anonymize DICOM files according to the DICOM standard
Novartis/torchsurv
Deep survival analysis made easy
lassoan/SlicerMONAIAuto3DSeg
Extension for 3D Slicer for running MONAI Auto3DSeg models
kaiko-ai/eva
Evaluation framework for oncology foundation models (FMs)
UK-Biobank/UKB-RAP-Notebooks-Access
UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
YijinHuang/Lesion-based-Contrastive-Learning
This is the official implementation of the paper Lesion-based Contrastive Learning for Diabetic Retinopathy Grading from Fundus Images.
alexanderjaus/AtlasDataset
cthoyt/zenodo-client
A tool for automated uploading and version management of scientific data to Zenodo
drpredict/drpredict
calico/ukbb-mri-sseg
UKBB MRI semantic segmentation for Abdominal Dixon and other modalities