Pinned Repositories
2019-ncov-japan
🦠 Interactive dashboard for real-time recording of COVID-19 outbreak in Japan
ASCPsra
将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。
AUCell
AUCell: score single cells with gene regulatory networks
awesome-R
A curated list of awesome R packages, frameworks and software.
best-of-ml-python
🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
cellphonedb
celltalker
Inference of cell-cell communication from single-cell RNAseq data
circlize
Circular visualization in R
clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
denghb001's Repositories
denghb001/ASCPsra
将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。
denghb001/AUCell
AUCell: score single cells with gene regulatory networks
denghb001/best-of-ml-python
🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.
denghb001/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
denghb001/cellphonedb
denghb001/celltalker
Inference of cell-cell communication from single-cell RNAseq data
denghb001/CNVnator
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
denghb001/COMETSC
COMET Single-Cell Marker Detection tool
denghb001/createKEGGdb
Create KEGG.db Package
denghb001/design-resource
A list of design resources.
denghb001/DGE_workshop
denghb001/gganatogram
Create anatograms using ggplot2
denghb001/ggseqlogo
Publication-quality sequence logos in R
denghb001/ggthemeassist
A RStudio addin for ggplot2 theme tweaking
denghb001/google-scholar-scrapy-spider
denghb001/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
denghb001/jspectra_viewer
JavaScript library for viewing spectra
denghb001/OrchestratingSingleCellAnalysis
Content for the OSCA Book.
denghb001/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
denghb001/SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
denghb001/scRNA.seq.course
Analysis of single cell RNA-seq data course
denghb001/scvelo
RNA Velocity generalized through dynamical modeling
denghb001/seurat
R toolkit for single cell genomics
denghb001/Seurat-to-RNA-Velocity
A guide to using a Seurat object in conjunction with RNA Velocity
denghb001/ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
denghb001/SuperCT
This project is for the development of a supervised classifier of cell typing based on the single-cell RNAseq digital expression profiles