denghui139

denghui139's Stars

• rcavalcante/annotatr

  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.

  Language:R268

• Aufiero/circRNAprofiler

  Language:HTML103

• zzygyx9119/QuasR

  This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/QuasR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=QuasR.

  Language:R1

• karakulahg/TEffectR

  Language:R95

• mhammell-laboratory/TEtranscripts

  A package for including transposable elements in differential enrichment analysis of sequencing datasets.

  Language:Python22930

• JialiUMassWengLab/TEMP

  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data

  Language:Perl2119

• ababaian/LIONS

  LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts

  Language:PostScript2713

• l-modolo/TEtools

  TE tools for TE RNASeq and smallRNASeq analysis with galaxy

  Language:HTML137

• shenlab-sinai/diffRepeats

  Quantify repeat element enrichment with next-generation sequencing data

  Language:Perl12

• HanLabUNLV/TEcoex

  transposable element co-expression analysis

  Language:R2

• michelleward/transposable_element

  Across species comparison of transposable element regulation:

  Language:CSS1

• hyunhwan-jeong/SalmonTE

  SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

  Language:Jupyter Notebook8123

• Boyle-Lab/TE-Driven-CTCF-Loop-Evol

  Language:R82

• JBerthelier/PiRATE

  PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)

  185

• 4ureliek/TEanalysis

  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.

  Language:Perl2511

• nerettilab/RepEnrich2

  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

  Language:Python369

• luckychen/TETranscript_parallel

  Language:Python2

• ChangLab/FAST-iCLIP

  Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

  Language:Jupyter Notebook2115