Issues
- 1
- 19
Step3: IndexError: string index out of range
#562 opened by ckiel3 - 1
running already demultiplexed sequences
#566 opened by Bunholi - 0
pair_fastqs.py `get_fastq_tuples_dict_from_paths_list` for SE data returns R1/R2 in sample names
#565 opened by isaacovercast - 10
- 1
- 1
- 3
step 3 slow
#561 opened by ospfsg - 2
TypeError while using ipyrad.analysis.popgen
#560 opened by spilornis-ng - 10
*.ustr file and other files not generated when using a genome as a reference in the assembly method
#542 opened by aroavaron - 12
Hyb-seq data, can be used with ipyrad?
#554 opened by AngieOrtizHerrera - 4
ipyrad v.0.9.94/95 frozen at the beggining
#558 opened by ospfsg - 0
analysis.treemix - toytree v3.0 compatibility
#559 opened by isaacovercast - 3
ipyrad reference assembly: Key error 7372
#556 opened by frsepulveda - 9
ipyrad-bucky error in python 3.12
#536 opened by tsm-tsm - 2
- 1
- 1
problems downloading Pedicularis example data
#552 opened by jesus-mavarez - 3
Popgen summary statistics fails when using imap
#550 opened by zwuckl - 4
ipyrad error step 6: ValueError: cannot copy sequence with size 298 to array axis with dimension 299
#551 opened by IvonedeBem - 1
Structure nreps 10 for k=[2, 3, …] on 16 Core CPU will only use 10 CPUs for each K
#549 opened by kindofausername - 5
Ipyrad excluding samples during demultiplexing stage
#548 opened by ikb001 - 1
Merging libraries of different read lengths
#547 opened by spilornis-ng - 4
combinatorial demultiplexing problem
#546 opened by TomaszSuchan - 5
How to export toyplot.csv in Structure analysis ?
#540 opened by khorikhori - 3
UnboundLocalError: local variable 'barcode' referenced before assignment
#545 opened by SerenaCaplins - 5
In Step 7: Message: ValueError: not enough values to unpack (expected 2, got 1)
#541 opened by aroavaron - 2
Repeated pandas FutureWarning messages
#544 opened by AlexaDiNicola - 2
VCF output fails
#543 opened by TomaszSuchan - 5
Problem installing ipyrad on ubuntu
#529 opened by kbkinsey - 7
ipyrad-baba error
#538 opened by tsm-tsm - 1
ipyrad - PE original RAD with reference
#539 opened by ivan06513 - 3
step3 error
#537 opened by Kenjicoral - 0
tetrad install in python 3.7
#535 opened by tsm-tsm - 1
tetrad install in python 3.8.12
#534 opened by tsm-tsm - 3
Erro engine
#533 opened by nguzman14 - 10
probleam in cutadapt with Ipyrad in Conda
#532 opened by cavdberg - 0
install old version of ipyrad
#531 opened by gargkritika - 5
An Error in Step3 # splitting loci so first file is smaller and last file is bigger
#530 opened by jljy47 - 2
The timing bar is not updated after closing the Jupyter notebook web page by mistake
#528 opened by jljy47 - 2
- 6
Can I reuse the files generated by Step 2,3,4 in a new data set to save a little time in a re-analysis
#522 opened by jljy47 - 3
ipyrad doesn't look for ipcluster in the right place
#526 opened by DBrusson - 5
- 0
- 0
ipa.sratools - Broken
#523 opened by isaacovercast - 0
Step 3: refminus for SE data
#521 opened by isaacovercast - 3
No module named \'cutadapt.cli\'\n’
#520 opened by zerdoner - 2
Optimal Min length of reads after adapter trim for paird-end ddRAD data.
#519 opened by AliBasuony2022 - 2