Pinned Repositories
boolean2pew
cell_collective_loader
cell_cycle_apoptosis_Sizek_etal_PloSCompBio_2019
compartmentalized_EMT_Boolean_model_Mendik_et_al_2021
conditionally_stable_circuits
This is the supporting notebook and code to the paper titled "A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint", submitted to Scientific Reports and available on bioRxiv under https://www.biorxiv.org/content/10.1101/654863v1
deriteidavid.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
hubris
midas_boolean_model
Supporting code for the following manuscript: https://www.biorxiv.org/content/10.1101/2023.12.18.572194v1.abstract
models_of_hhip_driven_emt_in_copd
pystablemotifs_benchmarks
This is a collection of tools to run benchmarks of the pystablemotifs package https://github.com/jcrozum/pystablemotifs
deriteidavid's Repositories
deriteidavid/conditionally_stable_circuits
This is the supporting notebook and code to the paper titled "A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint", submitted to Scientific Reports and available on bioRxiv under https://www.biorxiv.org/content/10.1101/654863v1
deriteidavid/pystablemotifs_benchmarks
This is a collection of tools to run benchmarks of the pystablemotifs package https://github.com/jcrozum/pystablemotifs
deriteidavid/cell_cycle_apoptosis_Sizek_etal_PloSCompBio_2019
deriteidavid/boolean2pew
deriteidavid/cell_collective_loader
deriteidavid/compartmentalized_EMT_Boolean_model_Mendik_et_al_2021
deriteidavid/deriteidavid.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
deriteidavid/hubris
deriteidavid/midas_boolean_model
Supporting code for the following manuscript: https://www.biorxiv.org/content/10.1101/2023.12.18.572194v1.abstract
deriteidavid/models_of_hhip_driven_emt_in_copd
deriteidavid/PyStableMotifs_succession_diagram_simplifications
A simple notebook containing some simplification steps to PyStableMotifs succession diagrams.
deriteidavid/succession_diagram_
This is a code to recursively build stable motif (maximal trapspace) succession diagrams using the PyBoolNet library.