dervinism

A neuroscientist coding in Matlab, Python, and Neuron

Pinned Repositories

abfUtilities
Python and Matlab functions for saving version 1 Axon Binary Files (ABF)
Language:Python0 1 00
bristol-neuroscience-data-guide
A guide to managing neuroscience data at the University of Bristol
Language:HTML0 1 01
convert2nwbEcephysMat
Matlab functions to convert ecephys recordings and associated behavioural data to Neurodata Without Borders (NWB) file format
Language:MATLAB1 1 01
dervinism.github.io
A webpage for Martynas Dervinis
Language:CSS1 1 00
geometricLayout
Matlab functions for Neuronexus probe mapping and processing binary files with electrophysiological recording data
Language:MATLAB2 1 00
GIN-tutorial-Mellor-lab-retreat-22-06-2022
An introductory tutorial to GIN (G-Node Infrastructure) neuroscience data sharing platform at UoB
Language:Jupyter Notebook1 1 00
kdeModalityTest
Matlab kernel density excess mass estimate of data modality
Language:MATLAB1 1 00
minis
'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/currents in whole-cell patch clamp recordings and to estimate the quantal size in the central synapse.
Language:MATLAB7 2 12
minis-benchmarking
Analysis code for minis benchmarking study
Language:MATLAB1 1 00
sortingPipeline
Matlab functions for spike-sorting with kilosort 1 and 2 compatible with both Neuronexus and Neuropixels probes
Language:MATLAB1 1 00

dervinism's Repositories

dervinism/minis
'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/currents in whole-cell patch clamp recordings and to estimate the quantal size in the central synapse.
Language:MATLAB7 2 12
dervinism/geometricLayout
Matlab functions for Neuronexus probe mapping and processing binary files with electrophysiological recording data
Language:MATLAB2 1 00
dervinism/convert2nwbEcephysMat
Matlab functions to convert ecephys recordings and associated behavioural data to Neurodata Without Borders (NWB) file format
Language:MATLAB1 1 01
dervinism/dervinism.github.io
A webpage for Martynas Dervinis
Language:CSS1 1 00
dervinism/GIN-tutorial-Mellor-lab-retreat-22-06-2022
An introductory tutorial to GIN (G-Node Infrastructure) neuroscience data sharing platform at UoB
Language:Jupyter Notebook1 1 00
dervinism/kdeModalityTest
Matlab kernel density excess mass estimate of data modality
Language:MATLAB1 1 00
dervinism/minis-benchmarking
Analysis code for minis benchmarking study
Language:MATLAB1 1 00
dervinism/sortingPipeline
Matlab functions for spike-sorting with kilosort 1 and 2 compatible with both Neuronexus and Neuropixels probes
Language:MATLAB1 1 00
dervinism/abfUtilities
Python and Matlab functions for saving version 1 Axon Binary Files (ABF)
Language:Python0 1 00
dervinism/bristol-neuroscience-data-guide
A guide to managing neuroscience data at the University of Bristol
Language:HTML0 1 01
dervinism/CellExplorer
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
Language:MATLAB0 0 00
dervinism/circStatNP
Non-parametric circular statistics functions for Matlab
Language:MATLAB0 2 00
dervinism/commonlib
Common use custom Matlab functions
Language:MATLAB0 1 00
dervinism/convert2nwbEcephysPy
Python functions to convert ecephys recordings and associated behavioural data to Neurodata Without Borders (NWB) file format
Language:Python0 1 01
dervinism/KilosortWrapper
Language:MATLAB0 1 01
dervinism/lfpProcessingFunctions
Matlab functions for processing LFP signal
Language:MATLAB0 1 00
dervinism/chronux_2_12v03
Modified chronux Matlab package (http://chronux.org/)
Language:MATLAB
dervinism/convert2nwbIcephysMat
Matlab functions to convert intracellular electrophysiology data to Neurodata Without Borders (NWB) file format.
Language:MATLAB1 01
dervinism/convert2nwbIcephysPy
Python functions to convert intracellular electrophysiology data to Neurodata Without Borders (NWB) file format.
Language:Python1 01
dervinism/convert2nwbOphysMat
Matlab functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format
Language:MATLAB1 01
dervinism/convert2nwbOphysPy
Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format
Language:Python1 01
dervinism/ms-preliminary-code
Top level scripts used to analyse medial septum (MS) preliminary recordings. The code is not intended for public use because it is not well documented and relies on many other dependencies. If you want to use it, get in touch.
Language:MATLAB
dervinism/petersen-lab-book
Petersen Lab Book github site repository
Language:HTML0 0
dervinism/petersen-lab-matlab
Matlab code for the PetersenLab at UCPH
Language:MATLAB
dervinism/phy-plugins
Plugins to extend Phy
Language:Python1 0
dervinism/pupcam
Matlab-based pupil camera GUI
Language:MATLAB1 0
dervinism/syncNeuropixels
Matlab functions for synchronising dual Neuropixels recording data
Language:MATLAB1 0
dervinism/thalamocortical1
Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 1
Language:MATLAB1 0
dervinism/thalamocortical2
Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 2
Language:MATLAB1 01
dervinism/UnitMatch
Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days. This is code is modified to run on data that is similar to the one in the ms-preliminary dataset
Language:MATLAB0 0