Pinned Repositories
1000-brains-challenge
In the 1000 Brains Challenge, participants will have to predict the age of healthy individuals based on structural Magnetic Resonance images of their brains.
3D-GAN-superresolution
3D super-resolution using Generative Adversarial Networks
3d-multi-resolution-rcnn
Official PyTorch implementaiton of the paper "3D Instance Segmentation Framework for Cerebral Microbleeds using 3D Multi-Resolution R-CNN."
3DSAM-adapter
Holistic Adaptation of SAM from 2D to 3D for Promptable Medical Image Segmentation
3DUnet-Tensorflow-Brats18
3D Unet biomedical segmentation model powered by tensorpack with fast io speed
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
Chinese-Brain-PET-Template
GenerativeModels
MONAI Generative Models makes it easy to train, evaluate, and deploy generative models and related applications
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
strokeai
This is a tool repository for stroke evaluation using CT / MRI imaging technologies.
devhliu's Repositories
devhliu/agent-sam
Segment Anything model wrapper used by the Medical Imaging Interaction Toolkit (MITK).
devhliu/brainmorph
A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration
devhliu/ChatTTS
ChatTTS is a generative speech model for daily dialogue.
devhliu/clinica
Software platform for clinical neuroimaging studies
devhliu/FALCON
FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.
devhliu/gpt_academic
为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。
devhliu/greedy
Very fast greedy diffeomorphic registration code
devhliu/kaapana
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
devhliu/magpylib
Python package for computation of magnetic fields of magnets, currents and moments.
devhliu/MagTetris
The codes the documents of MagTetris, a calculation tool of magnetic fields and forces of assembly of magnet blocks
devhliu/MCGPU-PET
devhliu/mercure
mercure DICOM Orchestrator
devhliu/MIRDCalculation
Python application to calculate internal dosimetry following MIRD formulation
devhliu/MITK
The Medical Imaging Interaction Toolkit.
devhliu/MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
devhliu/neuroHarmonize
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Neuroimage by Pomponio et al. (2019).
devhliu/niftyreg
This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities
devhliu/OMEGA
Open-source MATLAB Emission Tomography Software
devhliu/OpenTOPAS
Monte Carlo tool for particle simulation
devhliu/PUMA
Tool to multiplex different tracer PET data from the same patient.
devhliu/pyapetnet
a CNN for anatomy-guided deconvolution and denoising of PET images
devhliu/pymedphys
A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.
devhliu/PyTheranostics
PyTheranostics is a tool to help researchers develop and implement tools for personalized procedures in radiotheranostics.
devhliu/PyTomography
This repository enables easy and fast medical image reconstruction in Python.
devhliu/rpt_dosi
devhliu/scanhub
ScanHub combines multimodal data acquisition and complex data processing in one cloud platform.
devhliu/ScribblePrompt
ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Medical Image
devhliu/SIMIND-Tutorials
devhliu/simpet
SimPET is a framework intended to setup and launch PET imaging Monte Carlo simulations on a simple way. It uses popular tools such as SimSET and STIR
devhliu/TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images