Pinned Repositories
1000-brains-challenge
In the 1000 Brains Challenge, participants will have to predict the age of healthy individuals based on structural Magnetic Resonance images of their brains.
3D-GAN-superresolution
3D super-resolution using Generative Adversarial Networks
3d-multi-resolution-rcnn
Official PyTorch implementaiton of the paper "3D Instance Segmentation Framework for Cerebral Microbleeds using 3D Multi-Resolution R-CNN."
3DSAM-adapter
Holistic Adaptation of SAM from 2D to 3D for Promptable Medical Image Segmentation
3DUnet-Tensorflow-Brats18
3D Unet biomedical segmentation model powered by tensorpack with fast io speed
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
Chinese-Brain-PET-Template
GenerativeModels
MONAI Generative Models makes it easy to train, evaluate, and deploy generative models and related applications
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
strokeai
This is a tool repository for stroke evaluation using CT / MRI imaging technologies.
devhliu's Repositories
devhliu/agent-sam
Segment Anything model wrapper used by the Medical Imaging Interaction Toolkit (MITK).
devhliu/AISCT-SAM
The data and code for the paper "AISCT-SAM: A Clinical Knowledge-Driven Fine-Tuning Strategy for Applying Foundation Model to Fully Automatic Acute Ischemic Stroke Lesion Segmentation on Non-Contrast CT Scans" submitted to IEEE ICASSP 2025
devhliu/AmyloidPETNet
devhliu/AmyPET
Amyloid imaging to prevent Alzheimer's Disease
devhliu/Beyond-Centiloid-code
devhliu/brainchop
Brainchop.org: In-browser 3D MRI segmentation
devhliu/clinica
Software platform for clinical neuroimaging studies
devhliu/course_nucmed_tech
devhliu/DCCCSlicer
devhliu/FALCON
FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.
devhliu/ggems
GGEMS - Advanced Monte Carlo simulation platform using the OpenCL
devhliu/gpt_academic
为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。
devhliu/greedy
Very fast greedy diffeomorphic registration code
devhliu/kaapana
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
devhliu/keymorph
Robust multimodal image registration via keypoints
devhliu/Low_Field_Enhancement
The official implementation of `Quantitative Ischemic Lesions of Portable Low-Field-Strength MRI Using Deep Learning-Based Super-Resolution`
devhliu/MIRDCalculation
Python application to calculate internal dosimetry following MIRD formulation
devhliu/MITK
The Medical Imaging Interaction Toolkit.
devhliu/MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
devhliu/MRSegmentator
devhliu/opengate
Gate 10
devhliu/OpenTOPAS
Monte Carlo tool for particle simulation
devhliu/Organ-Segmentation
Deep learning multi modality automated organ segmentation tools
devhliu/PUMA
Tool to multiplex different tracer PET data from the same patient.
devhliu/pymedphys
A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.
devhliu/PyTomography
This repository enables easy and fast medical image reconstruction in Python.
devhliu/rpt_dosi
devhliu/SlicerHeart
3D Slicer extension for cardiac analysis
devhliu/TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
devhliu/TriDFusion
TriDFusion (3DF) Medical Imaging Viewer