Pinned Repositories
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
devindrown.github.io
diversity-scripts
HumanMicrobiome
Course website for Human Microbiome at UAF
jetson_nanopore_sequencing
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
microViz
R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available.
nanopolish
Signal-level algorithms for MinION data
Nanopore_urine_analysis
https://www.ncbi.nlm.nih.gov/pubmed/27667325
ncov
Nextstrain build for novel coronavirus (nCoV)
Porechop
adapter trimmer for Oxford Nanopore reads
devindrown's Repositories
devindrown/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
devindrown/devindrown.github.io
devindrown/diversity-scripts
devindrown/HumanMicrobiome
Course website for Human Microbiome at UAF
devindrown/jetson_nanopore_sequencing
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
devindrown/microViz
R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available.
devindrown/nanopolish
Signal-level algorithms for MinION data
devindrown/Nanopore_urine_analysis
https://www.ncbi.nlm.nih.gov/pubmed/27667325
devindrown/ncov
Nextstrain build for novel coronavirus (nCoV)
devindrown/Porechop
adapter trimmer for Oxford Nanopore reads