devonjkohler
PhD student at Northeastern University. Studying ML and statistics for mass spectrometry proteomics
Northeastern UniversityBoston, MA
Pinned Repositories
bioscrape
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
bioscrapePPL
Probabilistic Programming implementation of bioscrape pacakge
BiosysInference
causal-prog-rule-models
Causal_Inference_Project
gillespiePPL
The Gillespie algorithm implemented in different probabilistic programming languages.
MSstatsLiP
MSstatsPTM
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Omega_Implementations
A variety of models implemented using the probabilistic programming language Omega
sysbioDMM
devonjkohler's Repositories
devonjkohler/Causal_Inference_Project
devonjkohler/causal-prog-rule-models
devonjkohler/gillespiePPL
The Gillespie algorithm implemented in different probabilistic programming languages.
devonjkohler/Omega_Implementations
A variety of models implemented using the probabilistic programming language Omega
devonjkohler/bioscrape
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
devonjkohler/bioscrapePPL
Probabilistic Programming implementation of bioscrape pacakge
devonjkohler/BiosysInference
devonjkohler/MSstatsLiP
devonjkohler/MSstatsPTM
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
devonjkohler/sysbioDMM
devonjkohler/devonjkohler.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
devonjkohler/dkohler
devonjkohler/GeneSetValidator
R package to check correlations in MSigDB pathways using MS-based proteomics experimental data.
devonjkohler/MSbayesImp
devonjkohler/MScausality
Causal inference methods for mass spectrometry(MS)-based proteomics
devonjkohler/MSstatsBayes
devonjkohler/MSstatsPTM_simulations
Repository containing the simulation data and analysis used to evaluate MSstatsPTM
devonjkohler/MSstatsShinyDocker
Contains the docker image for MSstatsShiny
devonjkohler/MSstatsTMTPTM
R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling
devonjkohler/ProPPA
Source code for the implementation of the ProPPA platform
devonjkohler/pyprob
A probabilistic programming system for simulators and high-performance computing (HPC), based on PyTorch
devonjkohler/sbi
Simulation-based inference toolkit
devonjkohler/single_cell_scm
devonjkohler/y0
❓y0 (pronounced "why not?") is for causal inference in Python