/trial

Primary LanguageR

Example analysis

This repository contains some example code, used as during teaching of software carpentry bootcamps, e.g. nicercode.github.io/2016-02-01-ResBaz/lessons.

Example 1 - Using the standard R tools

Example 2 - Using the package remake

First install some dependencies from cran as follows:

install.packages(c("R6", "yaml", "digest", "crayon", "optparse", "storr", "devtools"))

Now we'll install some packages from github. For this, we'll use the package devtools, which we installed above.

Then install the package

devtools::install_github("richfitz/remake")

See the info in the remake readme for further details if needed.

Running

Open up the folder 2-remake and open up a new R session within that folder (e.g. by clicking on the folder remake.Rproj). We use a number of packages, these can be easily installed by remake:

remake::install_missing_packages()

Then, to generate the figures and tables, run

remake::make()

To generate the knitr report, run

remake::make("report.docx")