dfgao's Stars
blmoore/blogR
Scripts + data to recreate analyses published on http://benjaminlmoore.wordpress.com and http://blm.io
stemangiola/tidyseurat
Seurat meets tidyverse. The best of both worlds.
rfordatascience/tidytuesday
Official repo for the #tidytuesday project
xmc811/Scillus
R Package for Single-Cell Dataset Processing and Visualization
dpcook/thebaud_lung_BPD
R Notebooks for Hurskainen & Mizikova et al., 2020
takahirosuzuki0626/FOSLCs
spcanelon/tour-of-the-tidyverse
An Antarctic Tour of the Tidyverse: a tutorial created for R-Ladies Chicago
dgrun/RaceID
Algorithm for the inference of cell types from single-cell RNA-seq data.
MarioniLab/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
ambrosejcarr/seqc
Single-Cell Sequencing Quality Control and Processing Software
ma-compbio/Higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
bianlab-hub/zuo_ncomms_2021
lucasg/Dependencies
A rewrite of the old legacy software "depends.exe" in C# for Windows devs to troubleshoot dll load dependencies issues.
optics-dev/Monocle
Optics library for Scala
velocyto-team/velocyto.R
RNA velocity estimation in R
mkarikom/RSoptSC
Cell-cell communication and lineage inference for scRNA-seq data
WangShuxiong/SoptSC
SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
CGATOxford/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
sdparekh/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
hbctraining/scRNA-seq_online
hbctraining/scRNA-seq
xu-lab/SINCERA
An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
rocker-org/rocker-versioned2
Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
tractatus/spatial_transcriptomics_heart
high level analysis of spatial transcriptomics 3D data
Dragonmasterx87/Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
dariober/SICERpy
Python wrapper around the popular ChIP-Seq peak caller SICER
satijalab/seurat
R toolkit for single cell genomics
WRui/Post_Implantation
tallulandrews/scRNASeqPipeline