dfgao's Stars
bowang-lab/scGPT
amehime/hexo-theme-shoka
Just For https://shoka.lostyu.me/
theislab/single-cell-best-practices
https://www.sc-best-practices.org
mdozmorov/HiC_tools
A collection of tools for Hi-C data analysis
aristoteleo/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
NVIDIA-Genomics-Research/rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
kstreet13/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
CNIPA/PatentDatabases
A summary of patent information database URLs from all over the world.
theislab/scCODA
A Bayesian model for compositional single-cell data analysis
scverse/rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
neurorestore/Augur
Cell type prioritization in single-cell data
theMILOlab/SPATA2
A Toolbox for Spatial Transcriptomics Analysis
tanaylab/metacells
Metacells - Single-cell RNA Sequencing Analysis
LocasaleLab/Single-Cell-Metabolic-Landscape
Pipeline for exploring metebolic heterogeneity at single-cell resolution
GfellerLab/SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells
settylab/Mellon
Non-parametric density inference for single-cell analysis.
icbi-lab/luca
Single-cell Lung Cancer Atlas with 1.2M cells
ccruizm/GBmap
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
KlugerLab/GeneTrajectory
R implementation of GeneTrajectory
jlaffy/infercna
Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
maclean-lab/RVAgene
Recurrent Variational Auto gene encoder
fmicompbio/eisaR
Exon-Intron Split Analysis (EISA) in R
OSU-BMBL/IRIS3
IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)
naef-lab/CHIRAL
Phase inference from unlabeled "OMICS" data
bharathananth/compareRhythms
Approaches to identify Differential Rhythmicity
thomazbastiaanssen/kronos
bauerbach95/tempo
ranafi/PSEA
Discovering Biology in Periodic Data through Phase Set Enrichment Analysis
endo-lab/PeakMatch