dfgao

dfgao's Stars

• dylanaraps/pure-bash-bible

  📖 A collection of pure bash alternatives to external processes.

  Language:Shell36.8k748763.3k

• LiLittleCat/awesome-free-chatgpt

  🆓免费的 ChatGPT 镜像网站列表，持续更新。List of free ChatGPT mirror sites, continuously updated.

  Language:Python19.6k1498481.4k

• MouseLand/cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.5k28956437

• harvardinformatics/learning-bioinformatics-at-home

  resources for learning bioinformatics

  993470176

• workflowr/workflowr

  Organize your project into a research website

  Language:R84829255105

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  571386129

• broadinstitute/Tangram

  Spatial alignment of single cell transcriptomic data.

  Language:Jupyter Notebook283129754

• igordot/genomics

  A collection of scripts and notes related to genomics and bioinformatics

  Language:R2077655

• lovely-car/CAR

  导师评价2024.3.1

  2013018

• theMILOlab/SPATA2

  A Toolbox for Spatial Transcriptomics Analysis

  Language:R137514520

• changwn/scFEA

  single cell Flux Estimation Analysis (scFEA) Try the below web server!

  Language:Jupyter Notebook11716834

• YosefLab/Compass

  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

  Language:Python1061210730

• Teichlab/bin2cell

  Join subcellular Visium HD bins into cells

  Language:Jupyter Notebook853534

• zhengrongbin/MEBOCOST

  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data

  7112811

• settylab/Mellon

  Non-parametric density inference for single-cell analysis.

  Language:Jupyter Notebook67284

• Teichlab/Genes2Genes

  Aligning gene expression trajectories of single-cell reference and query systems

  Language:Jupyter Notebook62288

• yezhengSTAT/CUTTag_tutorial

  Tutorial Website

  Language:R5721318

• simonwm/tacco

  TACCO: Transfer of Annotations to Cells and their COmbinations

  Language:Python452201

• Sanofi-Public/enact-pipeline

  Repository for ENACT pipeline for end-to-end analysis of Visium HD data

  Language:Jupyter Notebook332138

• HectorRDB/condiments

  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression

  Language:R264395

• ChengxiangQiu/tome_code

  The scripts used for the analyses in TOME project

  Language:Jupyter Notebook233613

• fmicompbio/eisaR

  Exon-Intron Split Analysis (EISA) in R

  Language:R166124

• yi-zhang/STHD

  STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition

  Language:Jupyter Notebook15154

• matthewcarlucci/DiscoRhythm

  An R Package for Discovering Rhythmicity in Biological Data with an Interactive Web Interface

  Language:R13472

• Xieeeee/Droplet-Hi-C

  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript

  Language:Jupyter Notebook9173

• naef-lab/CHIRAL

  Phase inference from unlabeled "OMICS" data

  Language:R8112

• gangwug/SRBR_SMTSARworkshop2016

  Statistical Methods for Time Series Analysis of Rhythms Workshop in 2016 SRBR Meeting

  Language:R4200

• tanaylab/EmbExe

  EXE development paper analysis code

  Language:Jupyter Notebook4203

• achamolly/mechanical_self_organisation

  Code used in "Self-organized tissue mechanics underlie embryonic regulation" by Caldarelli et al.

  Language:Jupyter Notebook1101

• endo-lab/PeakMatch

  Language:Python1000