broadinstitute/Tangram

Issues

• Sparsity_sc and sparsity_sp = 0

  #118 opened 2 months ago by gboscagli
  0

• Running time for Tangram

  #120 opened 9 days ago by annaminyifeng
  0

• Interpretation of tangram_ct_pred

  #112 opened 5 months ago by abhishekmaj08
  2

• Please explain `project_cell_annotations`

  #119 opened 2 months ago by atharva-bhagwat
  0

• AttributeError: module 'tangram' has no attribute 'pp_adatas'

  #117 opened 2 months ago by chandraS76
  0

• Using Integrated single cell data for alignment

  #116 opened 2 months ago by abhishekmaj08
  0

• Cell counts

  #96 opened 3 months ago by spatts14
  2

• deterministic cell-typing of spatial data.

  #90 opened a year ago by CJChen1010
  3

• why enforce lowercase?

  #71 opened 2 years ago by giovp
  4

• Tangram Deconvolution

  #115 opened 3 months ago by abhishekmaj08
  1

• Problems about ploting

  #98 opened a year ago by HelloWorldLTY
  2

• error when sq.im.segment

  #114 opened 3 months ago by lvmt
  0

• scRNAseq cells < spatial cells, curious about how mapping works

  #108 opened 4 months ago by jayypaul
  3

• potential overfitting

  #111 opened 4 months ago by jayypaul
  5

• Option "enforce gene lowercase"

  #113 opened 4 months ago by yinan-wan0
  1

• Cannot find correspondence of the input data

  #104 opened 7 months ago by cindyway
  1

• Question about acceptable AUC, improving AUC

  #110 opened 6 months ago by boyangzhang1993
  1

• Unexpected behaviour

  #109 opened 6 months ago by dbdimitrov
  1

• Possible to use multiple single cell datasets in Tangram?

  #103 opened 8 months ago by boyangzhang1993
  3

• Some questions about best practices

  #106 opened 7 months ago by Dillon214
  1

• Attribute error : module 'tangram' has no attribute 'map_cells_to_space'

  #107 opened 7 months ago by Shikari666
  2

• Can we have an API as batch size for the integration method?

  #100 opened 9 months ago by HelloWorldLTY
  3

• Projecting spatial annotations to single cell

  #99 opened 10 months ago by tvegawaichman
  2

• Performance on Xenium/Merfish(Vizgen) - Single cell integration

  #97 opened a year ago by mortunco
  2

• High mapping score with big KL reg

  #84 opened a year ago by Fclef
  1

• question about training genes

  #105 opened 7 months ago by peizyi
  1

• Celltype specific Expression value with Tangram

  #77 opened 2 years ago by junyho486
  3

• No attribute 'pp_adatas' in tangram

  #102 opened 8 months ago by ParitoshP702
  2

• Question about parallelizing over multiple GPUs

  #69 opened 2 years ago by brianysoong
  2

• Tangram function cross_val uses deprecated alias function - can be updated?

  #91 opened a year ago by Laura-Waechter
  1

• .

  #93 opened a year ago by gebdu
  0

• Requirements for the input data

  #95 opened a year ago by Epoch1128
  1

• Filtering low quality genes

  #92 opened a year ago by quentinblampey
  0

• Error when Installing Tangram on Terra

  #89 opened a year ago by VivianQM
  0

• Best practices on 500k+ cells

  #88 opened a year ago by quentinblampey
  2

• Question regarding count_cell_annotation

  #86 opened a year ago by scseeman
  1

• map_cells_to_space "could not determine the shape of object type 'Series'" error

  #87 opened a year ago by pakiessling
  3

• Recreating Figure 4C from the original publication on the tutorial data

  #85 opened a year ago by aaronkwong
  0

• Using Tangram with MERFISH and visualizing

  #82 opened a year ago by wdg118
  14

• Annotating cluster labels after cell segmentation on Visium

  #83 opened a year ago by Qirongmao97
  3

• count_cell_annotations doesn't work with specific column values

  #78 opened a year ago by witchhead
  7

• Typo in tutorial

  #80 opened a year ago by boyiguo1
  1

• Error in `plot_auc`

  #81 opened a year ago by simonmfr
  2

• Add b/w plotting option to tg.plot_genes_sc()

  #72 opened 2 years ago by simonmfr
  2

• How can I calculate the distance between two cell types based on the results of tangram?

  #79 opened 2 years ago by Smilenone
  3

• Co-localization of cell types using cell type maps

  #73 opened 2 years ago by torgheh
  1

• Question regarding ad_map variable

  #75 opened 2 years ago by ankitbioinfo
  1

• Kernel dying during map_cells_to_space

  #76 opened 2 years ago by vicmuck
  1

• Analysis for other type of tissue

  #74 opened 2 years ago by pengjini
  1

• the coordinates are flipped

  #70 opened 2 years ago by Lena926
  2