Pinned Repositories
xfuse
Super-resolved spatial transcriptomics by deep data fusion
regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
confuns
Convenience R functions
DEP
DEP package
eggplant
multi-Organ-EC
Tangram
Spatial alignment of single cell transcriptomic data.
volcanoplot
Volcanoplot in Python
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
SPATA2
A Toolbox for Spatial Transcriptomics Analysis
simonmfr's Repositories
simonmfr/confuns
Convenience R functions
simonmfr/DEP
DEP package
simonmfr/eggplant
simonmfr/multi-Organ-EC
simonmfr/Tangram
Spatial alignment of single cell transcriptomic data.
simonmfr/volcanoplot
Volcanoplot in Python
simonmfr/P6-ST
simonmfr/scanorama
Panoramic stitching of single cell data
simonmfr/scanpy-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using scanpy
simonmfr/scib
Benchmarking analysis of data integration tools
simonmfr/scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
simonmfr/SCINA
SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
simonmfr/seurat
R toolkit for single cell genomics
simonmfr/SPATA
SPATA Package for spatial gene expression analysis
simonmfr/SPATA2
A Toolbox for Spatial Gene Expression Analysis
simonmfr/SPATAData
The database for spatially resolved transcriptomics
simonmfr/squidpy
Spatial Single Cell Analysis in Python
simonmfr/SRTsim
simonmfr/TwoSampleMR
R package for performing 2-sample MR using MR-Base database
simonmfr/VISION
Signature Analysis and Visualization for Single-Cell RNA-seq
simonmfr/workshop-scRNAseq
Single cell RNA sequencing analysis course
simonmfr/workshop_omics_integration
Workshop in omics integration and systems biology