HectorRDB/condiments

Issues

• topologyTest & topologyTest_multipleSamples

  #40 opened 20 days ago by AndreaYCT
  2

• topologyTest() returns an error when running Classifier test

  #16 opened 22 days ago by cgoneill
  14

• topologyTest error Error in pcurves[[l.ind]] : subscript out of bounds

  #38 opened 3 months ago by jiw181
  2

• recommanded p value for significant difference and conditionTest()

  #37 opened 3 months ago by AndreaYCT
  1

• create_differential_topology

  #35 opened 2 months ago by AAlhendi1707
  1

• Plotting Pseudotime Values

  #36 opened 2 months ago by anemartinezlarrinaga2898
  1

• Discussion: When two trajectories are needed

  #32 opened 2 months ago by MartaSanchezCarbonell
  1

• patternTest on separate fitGAM objects

  #34 opened 6 months ago by Alexis-Varin
  4

• Large difference in two computations of fateSelectionTest()

  #33 opened 7 months ago by Alexis-Varin
  2

• Provide reordered counts matrix after "condiments::slingshot_conditions" for TradeSeq "fitGAM"

  #30 opened 7 months ago by Jaimelan
  4

• Following vignette, no condimentsPaper package

  #31 opened 10 months ago by chungsai
  2

• Performing test between two conditions in an object than contains more

  #28 opened a year ago by Yanst86
  2

• Theory Basis of Differential Progression

  #27 opened a year ago by GilbertHan1011
  4

• trying to understand the outputs of fateSelectionTest() vs differentiationTest()

  #26 opened a year ago by klai001
  4

• Doubts regarding differential gene expression analysis

  #29 opened a year ago by Jaimelan
  0

• Using condiments on ctrl treatment data from two time points

  #25 opened a year ago by Rohit-Satyam
  2

• Error with conditionTest

  #24 opened a year ago by jordiabante
  2

• unable to install Ecume

  #21 opened a year ago by zara03
  2

• error for running 'imbalance_score' function

  #20 opened a year ago by dahun73
  6

• conditionTest log2FC

  #22 opened a year ago by flde
  2

• imbalance_score for more than 2 dimensions

  #23 opened a year ago by nickhir
  1

• condiments Package

  #18 opened a year ago by Nab14
  10

• problem when installing condiments

  #6 opened 3 years ago by liuweihanty
  4

• Question on tutorial "Analysis of the fibrosis datataset"

  #19 opened 2 years ago by france-hub
  2

• starting from Seurat object or sce

  #17 opened 2 years ago by econnolly7
  1

• Questions about the lineage curves: colors & extracting

  #15 opened 2 years ago by SimoniMD
  4

• Error: For now this only works downstream of slingshot

  #14 opened 3 years ago by RicardoMartins-Ferreira
  2

• Run clusterExpressionPatterns based on conditions?

  #12 opened 3 years ago
  3

• Compatibility with replicates?

  #13 opened 3 years ago by cohenp05
  2

• fitGAM run time

  #11 opened 3 years ago by Sa753
  2

• Out put of the topology test for multiple comparisons

  #10 opened 3 years ago
  3

• assigning a lineage

  #7 opened 3 years ago by cristanchoa
  2

• How to handle cells that belong to multiple overlapping lineages

  #9 opened 3 years ago by jeremymsimon
  2

• fitGAM issue

  #8 opened 3 years ago by kunUCSD
  4

• Trajectory inference multiple conditions

  #3 opened 3 years ago by dhivyaa-6
  2

• topology test question

  #4 opened 3 years ago by lb15
  2

• not enough 'y' data when running KS-mean test in topologyTest() function

  #5 opened 3 years ago by PeggySze
  4

• example("differentiationTest") => Error: there is no package called ‘DelayedMatrixStats’

  #2 opened 3 years ago by HenrikBengtsson
  3

• Compilation issue from wsl2

  #1 opened 4 years ago by kmshort
  3