Pinned Repositories
Chronophage
Code for the publication Redhai & Hirschmüller et al., 2024
ClusterMonitor
Very simple script which logs the CPU and RAM usage of the submitted job.
DGEvistools
Small R package with some functions to visualize DGE results downstream of DESeq2
GenotypeImputationWorkflow
An easy to use workflow to impute genotypes using the Michigan Imputation Server and the Haplotype Reference Consortium.
GermlineMutationCalling
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
interactive-digit-recognition
Combination of pygame and keras to recognize digitally written digits.
miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
PhraseBase
Program which searches through thousands of papers and tries to match a certain input string
pyfilemv
Alternative for unix 'mv', which searches through your files and updates any references to the file that you just moved.
RedditLookoutBot
Very simple Reddit bot which monitors submissions and comments in user defined subreddits and extracts relevant posts/comments based on the occurrence of keywords. .
nickhir's Repositories
nickhir/ClusterMonitor
Very simple script which logs the CPU and RAM usage of the submitted job.
nickhir/PhraseBase
Program which searches through thousands of papers and tries to match a certain input string
nickhir/DGEvistools
Small R package with some functions to visualize DGE results downstream of DESeq2
nickhir/GermlineMutationCalling
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
nickhir/RedditLookoutBot
Very simple Reddit bot which monitors submissions and comments in user defined subreddits and extracts relevant posts/comments based on the occurrence of keywords. .
nickhir/GenotypeImputationWorkflow
An easy to use workflow to impute genotypes using the Michigan Imputation Server and the Haplotype Reference Consortium.
nickhir/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
nickhir/Chronophage
Code for the publication Redhai & Hirschmüller et al., 2024
nickhir/ggVennDiagram
A 'ggplot2' implement of Venn Diagram.
nickhir/interactive-digit-recognition
Combination of pygame and keras to recognize digitally written digits.
nickhir/InteractiveManhattan
Simple Shiny app, which can be used to interactively generate Manhattan plots
nickhir/pyfilemv
Alternative for unix 'mv', which searches through your files and updates any references to the file that you just moved.
nickhir/IntestiMap
nickhir/locuszoomr
A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
nickhir/magic_frame
nickhir/PseudotimeDE
A robust DE test method that accounts for the uncertainty in pseudotime inference
nickhir/QTLight
eqtl analysis pipeline using tensorqtl
nickhir/SCENT
Estimation of Single-Cell Potency with Single Cell Entropy