Alexis-Varin

I am a research engineer using R and Python for transcriptomic analyses (scRNA-seq, bulk RNA-seq and microarray) and AI computer vision.

Inserm UMR RightFrance

Pinned Repositories

Lamian
Language:HTML0 0 00
RightCIBERSORTxTools
An R package to build a Reference Matrix and a Mixture File for CIBERSORTx
Language:R2 1 01
RightSeuratTools
An R package providing complementary tools for Seurat
Language:R2 1 00
LabguruR
Language:R5 4 94
condiments
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
Language:R24 4 383
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Language:R274 2 22642
scry
Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
Language:R19 5 222
seurat
R toolkit for single cell genomics
Language:R2.3k 72 8k909
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
Language:HTML238 7 25027
Lamian
Language:HTML44 4 2810

Alexis-Varin's Repositories

Alexis-Varin/RightCIBERSORTxTools
An R package to build a Reference Matrix and a Mixture File for CIBERSORTx
Language:R2 1 01
Alexis-Varin/RightSeuratTools
An R package providing complementary tools for Seurat
Language:R2 1 00
Alexis-Varin/Lamian
Language:HTML0 0 00