Pinned Repositories
SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
scvi-tools
Deep probabilistic analysis of single-cell omics data
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference
ComplexHeatmap
Make Complex Heatmaps
miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference
flde's Repositories
flde/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
flde/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
flde/scvi-tools
Deep probabilistic analysis of single-cell omics data
flde/tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
flde/vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference