Pinned Repositories
bioc2021trajectories
Repository for the Bioc2021 workshop.
Caldera_ISMB
condiments
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
condimentsPaper
Scripts to reproduce the condiments Paper
Dune
Iterative merging of clusters to improve mean ARI
Dune_Paper
Scripts to reproduce analyses of Dune paper.
Ecume
This package implements (or re-implements in R) a variety of statistical tools used to do non-parametric two-sample (or k-sample) distribution comparisons in the univariate or multivariate case.
NationalAssembly
A short tutorial to help beginners in biostatistics and genomics understand an usual single-cell RNA-sequencing workflow
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
tradeSeqPaper
Scripts to reproduce analyses of tradeSeq paper.
HectorRDB's Repositories
HectorRDB/condiments
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
HectorRDB/Dune
Iterative merging of clusters to improve mean ARI
HectorRDB/bioc2021trajectories
Repository for the Bioc2021 workshop.
HectorRDB/Caldera_ISMB
HectorRDB/condimentsPaper
Scripts to reproduce the condiments Paper
HectorRDB/Ecume
This package implements (or re-implements in R) a variety of statistical tools used to do non-parametric two-sample (or k-sample) distribution comparisons in the univariate or multivariate case.
HectorRDB/NationalAssembly
A short tutorial to help beginners in biostatistics and genomics understand an usual single-cell RNA-sequencing workflow
HectorRDB/CodeName
HectorRDB/Dune_Paper
Scripts to reproduce analyses of Dune paper.
HectorRDB/PH290-Final-Project
Final project for PH 290, Spring 2019
HectorRDB/CS289_Final_Project
HectorRDB/DailyHRB
Package to load useful functions that I use on a daily basis. It also contains a template for an Rmd and RStudio Project template.
HectorRDB/HBC-regen
Code and resources related to the olfactory regeneration project
HectorRDB/HectorRDB.github.io
HectorRDB/p63-HBC-diff
Code and resources related to the olfactory HBC stem cell differentiation project (oeHBCdiff)
HectorRDB/Pancreas
HectorRDB/Pipeline_Brain
HectorRDB/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.