dgavr

biotagging

Python scripts necessary to reproduce ATAC-seq and RNA-seq analysis in Biotagging manuscript

Histone_ChIPseq_questioning

Single_Cell_Iterative_Pooling

Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene

Useful_small_scripts_for_DESeq2

Some useful scripts useful for parsing or writing DESeq2 Scripts

Zebrafish_mappability

Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes

dgavr/Single_Cell_Iterative_Pooling

Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene

dgavr/biotagging

Python scripts necessary to reproduce ATAC-seq and RNA-seq analysis in Biotagging manuscript

dgavr/Histone_ChIPseq_questioning

dgavr/Useful_small_scripts_for_DESeq2

Some useful scripts useful for parsing or writing DESeq2 Scripts

dgavr/Zebrafish_mappability

Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes