Pinned Repositories
align_illumina_against_reference
runs bwa quickly by using illumina reads split into bunches
ARCkmerFinder
Will use kmer occurrence to find locations of introgression from ancient ethnicities
blasr
This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
blasr_genome_vs_genome
snakemake pipeline for creating a bedfile of aligned regions
DALIGNER
Find all significant local alignments between reads
FALCON
FALCON: experimental PacBio diploid assembler
for_rachel
learning
mcutils
oceans
note on undersea bases
dgordon562's Repositories
dgordon562/align_illumina_against_reference
runs bwa quickly by using illumina reads split into bunches
dgordon562/ARCkmerFinder
Will use kmer occurrence to find locations of introgression from ancient ethnicities
dgordon562/blasr
This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
dgordon562/blasr_genome_vs_genome
snakemake pipeline for creating a bedfile of aligned regions
dgordon562/DALIGNER
Find all significant local alignments between reads
dgordon562/FALCON
FALCON: experimental PacBio diploid assembler
dgordon562/for_rachel
dgordon562/learning
dgordon562/mcutils
dgordon562/oceans
note on undersea bases
dgordon562/pacbio_variant_caller
SMRT-SV: Structural variant and indel caller for PacBio reads
dgordon562/smartie-sv
calling SVs from Blasr contig level alignments
dgordon562/Spoon-Knife
This repo is for demonstration purposes only.
dgordon562/xxx