Pinned Repositories
american-gut-web
The website for the American Gut Project participant portal
cho-workflow
Workflow for combining RNA seq data with iCHOv1 metabolic model
diff_snps
Diffs the output file format of the Geneious tool for snp computation so you can tell what's shared and what's different between two monocultures relative to some reference
dm_assist
emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
evident
Effect size calculations for microbiome data
iMSMS_study
Gut microbiome study in multiple sclerosis
metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
momi
Molecular mimicry scripts tailored to search for myelin mimics in the gut microbiome
wol-cluster
dhakim87's Repositories
dhakim87/momi
Molecular mimicry scripts tailored to search for myelin mimics in the gut microbiome
dhakim87/wol-cluster
dhakim87/american-gut-web
The website for the American Gut Project participant portal
dhakim87/cho-workflow
Workflow for combining RNA seq data with iCHOv1 metabolic model
dhakim87/diff_snps
Diffs the output file format of the Geneious tool for snp computation so you can tell what's shared and what's different between two monocultures relative to some reference
dhakim87/dm_assist
dhakim87/emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
dhakim87/evident
Effect size calculations for microbiome data
dhakim87/iMSMS_study
Gut microbiome study in multiple sclerosis
dhakim87/metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
dhakim87/microsetta-admin
dhakim87/microsetta-private-api
A private microservice to support The Microsetta Initiative
dhakim87/ndlines
Find n dimensional lines in huge dimension spaces and name them
dhakim87/netseq
Ranking of candidate cyclopeptides by analysis of spectral networks
dhakim87/oauth_server_test
Test implementation of node's oauth2_server necessary model hooks and backend
dhakim87/paDownload
Downloads xml files from protein atlas api, does simple parsing and bulk download of images
dhakim87/pavel-proj
Clique Finding Project
dhakim87/pretty-meta
Java Swing force vector layout for metabolic networks
dhakim87/protein-atlas-distance
Scripts for converting human protein atlas staining imagery into a distance metric between proteins.
dhakim87/qiita
Qiita - A multi-omics databasing effort
dhakim87/sam-share
dhakim87/woltka
Web of Life Toolkit App
dhakim87/zebra_filter
Filtering out false taxonomic hits from shotgun sequencing based on genome coverage